View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17338_high_15 (Length: 329)

Name: NF17338_high_15
Description: NF17338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17338_high_15
NF17338_high_15
[»] chr1 (3 HSPs)
chr1 (126-234)||(13362076-13362186)
chr1 (221-309)||(13362227-13362317)
chr1 (32-70)||(13361981-13362019)
[»] chr4 (3 HSPs)
chr4 (221-301)||(50056725-50056805)
chr4 (126-234)||(50056571-50056684)
chr4 (32-70)||(50056475-50056513)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 13362076 - 13362186
Alignment:
Q  126 caaacccagatctataaacatttatattctctgctttgctggattttgtttctca--nnnnnnnnccaaagggaattgcatccatgatttcaataaaaat 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||          ||||||||||||| |||||||||||||||||||||    
T  13362076 caaacccagatctataaacatttatattctctactttgctggattttgtttctcattttttttttccaaagggaattggatccatgatttcaataaaaat 13362175  T
Q  224 gtttgagaaat 234  Q
    |||||| ||||    
T  13362176 gtttgaaaaat 13362186  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 13362227 - 13362317
Alignment:
Q  221 aatgtttgagaaatttagagtcatgggcat--gaatggatattgaggaacaagcttcgtgttacggtgaatgttattgttgttgatgatgt 309  Q
    |||||||||||||||| |||||||||| ||  ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  13362227 aatgtttgagaaatttggagtcatgggtatatgaatggatattgaggaacaagcttcatgttatggtgaatgttattgttgttgatgatgt 13362317  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 13361981 - 13362019
Alignment:
Q  32 agcaaagcaattccataagcattaaagagaacaaaaacc 70  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13361981 agcaaagcaattccataagcattaaagagaacaaaaacc 13362019  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 50056725 - 50056805
Alignment:
Q  221 aatgtttgagaaatttagagtcatgggcatgaatggatattgaggaacaagcttcgtgttacggtgaatgttattgttgtt 301  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||| |||||  |||| |||||||||||||||||||    
T  50056725 aatgtttgagaaatttggagtcataggtatgaatggatattgaggaacaggcttcaagttatggtgaatgttattgttgtt 50056805  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 50056571 - 50056684
Alignment:
Q  126 caaacccagatctataaacatttat----attctctgctttgctggattttgtttctcannnnnnnn-ccaaagggaattgcatccatgatttcaataaa 220  Q
    ||||||||||||||||||||| |||    |||||||||||| |||||||||||||||||         ||||||||||||| ||||||||||||||||||    
T  50056571 caaacccagatctataaacatgtatgtatattctctgctttcctggattttgtttctcatctttgtttccaaagggaattggatccatgatttcaataaa 50056670  T
Q  221 aatgtttgagaaat 234  Q
    ||||||||| ||||    
T  50056671 aatgtttgacaaat 50056684  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 50056475 - 50056513
Alignment:
Q  32 agcaaagcaattccataagcattaaagagaacaaaaacc 70  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  50056475 agcaaagcaattccataagcattaaagagaataaaaacc 50056513  T

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