View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17338_high_22 (Length: 311)
Name: NF17338_high_22
Description: NF17338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17338_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 4236085 - 4235785
Alignment:
| Q |
1 |
ggtataatcagttgtggagtactttccctactatgaccaacatgcatatggtcataatttgtataacaagcattgtagcattccacatgagctacattgt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236085 |
ggtataatcagttgtggagtgctttccctactatgaccaacatgcatattgtcataatttgtataacaagcattgtagcattccacatgagctacattgt |
4235986 |
T |
|
| Q |
101 |
tgggggctgcactgttattaccatggtcacttcctttgttgattattttttcatatgaatctcttacattattaatggaattactaccatgttgtctagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235985 |
tgggggctgcactgttattaccatggtcacttcctttgttgattattttttcatatgaatctcttacattattaatggaattactaccatgttgtctagg |
4235886 |
T |
|
| Q |
201 |
ctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattagtcttctct |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235885 |
ctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattagtcttctct |
4235786 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
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|
| T |
4235785 |
g |
4235785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 38887183 - 38887074
Alignment:
| Q |
192 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
291 |
Q |
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||||||||||||||| |||||||| | || ||| | || ||||| || ||| | || |||||||| | |||||||||||||| ||||| |||||||| |
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| T |
38887183 |
ttgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcataacccaattt |
38887084 |
T |
|
| Q |
292 |
gtcttctctg |
301 |
Q |
| |
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|| ||||||| |
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| T |
38887083 |
gttttctctg |
38887074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 6589015 - 6589159
Alignment:
| Q |
111 |
actgttattaccatggtcacttcctttgttgattatttttt-catatgaatctcttacattattaatggaattactaccatgttgtctaggctgtgtctg |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
6589015 |
actgttattaccatggccacttcctttgttcattatttttttcttatgaatctcttacattattaatggaattacga---tgttgtctaggctgtgtctg |
6589111 |
T |
|
| Q |
210 |
gtagaagatctttgaagcaacaaattctccatctctttcttcttcatt |
257 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6589112 |
gtagaagatctttgaagcaacaaattctccatctatttcttcttcatt |
6589159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 34829843 - 34829950
Alignment:
| Q |
192 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
291 |
Q |
| |
|
||||| ||| ||||| ||||| || | ||||||| |||| ||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
34829843 |
ttgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattg |
34829942 |
T |
|
| Q |
292 |
gtcttctc |
299 |
Q |
| |
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|||||||| |
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| T |
34829943 |
gtcttctc |
34829950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 28948724 - 28948805
Alignment:
| Q |
218 |
tctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattagtcttctc |
299 |
Q |
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|||||||| |||| ||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |
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| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctc |
28948805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 43015297 - 43015191
Alignment:
| Q |
193 |
tgtctaggctgtgtctggtagaagatctttgaagcaacaaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
292 |
Q |
| |
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||||| ||||||||||| || || ||||||||| |||||| ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
43015297 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
43015198 |
T |
|
| Q |
293 |
tcttctc |
299 |
Q |
| |
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||||||| |
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|
| T |
43015197 |
tcttctc |
43015191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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