View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17338_high_8 (Length: 350)
Name: NF17338_high_8
Description: NF17338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17338_high_8 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 339
Target Start/End: Complemental strand, 38301391 - 38301054
Alignment:
| Q |
2 |
tcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattcc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38301391 |
tcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattcc |
38301292 |
T |
|
| Q |
102 |
ataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagac |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38301291 |
ataaattaccattattaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagac |
38301192 |
T |
|
| Q |
202 |
gcatgagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattatta |
301 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38301191 |
gcgtgagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattatta |
38301092 |
T |
|
| Q |
302 |
ttactcttccaccactgtaatacatccatatcttcatc |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38301091 |
ttactcttccaccactgtaatacatccatatcttcatc |
38301054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 38310026 - 38309697
Alignment:
| Q |
9 |
ctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaatt |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||| ||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| |||||||| |
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|
| T |
38310026 |
ctccatctacatatcataattgaggaggataataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaattacataaatt |
38309927 |
T |
|
| Q |
109 |
accattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgag |
208 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||| || | |||| |
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|
| T |
38309926 |
accattgccaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgag |
38309827 |
T |
|
| Q |
209 |
cccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactct |
308 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |
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|
| T |
38309826 |
cccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctct |
38309727 |
T |
|
| Q |
309 |
tccaccactgtaatacatccatatcttcat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38309726 |
tccaccactgtaatacatccatatcttcat |
38309697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 38307282 - 38306955
Alignment:
| Q |
5 |
tcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccata |
104 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| | ||| |||||| |||||||||||||| ||| | |||||||| ||||||||||| || | |
|
|
| T |
38307282 |
tcttttccatctacaaatcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatat------acattcaaattacaca |
38307189 |
T |
|
| Q |
105 |
aattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgca |
204 |
Q |
| |
|
|||||||| |||| ||||||| || ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38307188 |
gattaccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcg |
38307089 |
T |
|
| Q |
205 |
tgagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattatta |
304 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
38307088 |
tgagcccatgcaaaattcaaaatcagaagccacagtggtaatgggaacacttaacaagtcacaagccagtattgatagatctggatatcgatcattatta |
38306989 |
T |
|
| Q |
305 |
ctcttccaccactgtaatacatccatatcttcat |
338 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
38306988 |
ctcttccaccattgtaatacatccatatcttcat |
38306955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 38322130 - 38321797
Alignment:
| Q |
5 |
tcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccata |
104 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| |||||| || ||| | | |||| |||| ||||| |||||||| |||||||| | ||||| | || |
|
|
| T |
38322130 |
tcttctccaactacatatcataattgaaaaggttaataattaaagtgacaactagttaccaaaacaatacaatcatatgtatttacacttaaattacgta |
38322031 |
T |
|
| Q |
105 |
aattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgca |
204 |
Q |
| |
|
|||||||| | ||||||||||| |||||| |||||||||| | ||||| |||| ||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
38322030 |
gattaccatcgcgaacaaaattgtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaaacgtg |
38321931 |
T |
|
| Q |
205 |
tgagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattatta |
304 |
Q |
| |
|
|||| |||||||| || ||||| ||||||| ||| ||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38321930 |
caagcctatgcaaaaatccaaatcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattattatta |
38321831 |
T |
|
| Q |
305 |
ctcttccaccactgtaatacatccatatcttcat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
38321830 |
ctcttccaccactgtaatacatccatatcttcat |
38321797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 38314632 - 38314298
Alignment:
| Q |
5 |
tcttctccatctacatatcataattgaagaggtttataattcaattgaacag-tggttatcaaaccaataaaatcatatctatttacattcaaattccat |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| | |||| ||| ||||||||||| ||||| | | || | |||| ||||| ||||| || |
|
|
| T |
38314632 |
tcttctccatctacatatcataatcgaagagattaataactaaattacccaggtggttatcaaaacaatacacttatttatattcacatttaaattagat |
38314533 |
T |
|
| Q |
104 |
aaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgc |
203 |
Q |
| |
|
| |||||||| |||||||||||| || ||| ||||||| || |||||||||||||||| ||| || ||||| ||||||||||||||||| || || | |
|
|
| T |
38314532 |
agattaccatcactaacaaaattgtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttatacttgtttaacacac |
38314433 |
T |
|
| Q |
204 |
atgagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattatt |
303 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38314432 |
gtgagcccatgcaaaattcaaaatcagaagccactgtggcaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgatttgaatt |
38314333 |
T |
|
| Q |
304 |
actcttccaccactgtaatacatccatatcttcat |
338 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
38314332 |
actcttccaccattgtaatacatccatatcttcat |
38314298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 38318035 - 38317708
Alignment:
| Q |
14 |
tctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataa---attac |
110 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||| || ||||||||| | |||| |||||||| |||||||||| ||| |||| ||||| |
|
|
| T |
38318035 |
tctacatatcacaattgaagaggttaataataaaattgaccactggttatcagaagaatacaatcatatttatttacatttaaagaacatagtagattac |
38317936 |
T |
|
| Q |
111 |
cattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgagcc |
210 |
Q |
| |
|
||| | | |||||||||| ||||| |||||||||| |||||||||||||||||| | |||| | ||||||||| ||||||||||||||| | ||| || |
|
|
| T |
38317935 |
catcgcttacaaaattgtataaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacacgtgaacc |
38317836 |
T |
|
| Q |
211 |
catgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttc |
310 |
Q |
| |
|
||||||||| ||| |||| ||||| || |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
38317835 |
catgcaaaattcagaatcagaagcaacagtggcaatgggaacacttaacaagtcgcaagctaatattgatagatccggaaatcgattattatttctcttc |
38317736 |
T |
|
| Q |
311 |
caccactgtaatacatccatatcttcat |
338 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
38317735 |
caccattgtaatacatccatatcttcat |
38317708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 338
Target Start/End: Complemental strand, 38326851 - 38326509
Alignment:
| Q |
2 |
tcatcttctccatctacatatcataattgaagaggtttataattcaattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattc- |
100 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||||| |||||| ||| || | |||||||||||| ||| | | | | || ||| |||||| ||||| |
|
|
| T |
38326851 |
tcatcctcttcatctacatatcaaaattgaagaggttaataattaaatagacctgtggttatcaaaacaacacagttacatatatatacattaaaattta |
38326752 |
T |
|
| Q |
101 |
-----cataaattaccattgttaacaaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgtt |
195 |
Q |
| |
|
|||||| |||||||| | |||||||||| |||||| ||| |||||| ||||| | |||||||||||| |||| |||| | ||||||||||| | |
|
|
| T |
38326751 |
aattacataaagtaccattgctgacaaaattgtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtctttatacttttc |
38326652 |
T |
|
| Q |
196 |
aaagacgcatgagcccatgcaaaactcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcga |
295 |
Q |
| |
|
||| |||| || ||||||||||| || ||||| || ||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| | |
|
|
| T |
38326651 |
aaatacgcgtgcacccatgcaaaattccaaatcagatgcgacagtggcaatgggaacacttaacaagtcacaagccaaaattgatagatctggaaatcaa |
38326552 |
T |
|
| Q |
296 |
ttattattactcttccaccactgtaatacatccatatcttcat |
338 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
38326551 |
ttataattactcttccaccattctaatacatccatgtcttcat |
38326509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 121 - 330
Target Start/End: Original strand, 38849411 - 38849620
Alignment:
| Q |
121 |
aaaattgtgcaaccaggtgcgagtacacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcatgagcccatgcaaaac |
220 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
38849411 |
aaaattgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacgtgagcccatgcaaaat |
38849510 |
T |
|
| Q |
221 |
tcaaaatcggaagcgacggtggtaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttccaccactgta |
320 |
Q |
| |
|
||| |||| ||||| || | || |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
38849511 |
tcagaatcagaagctacagcggcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattattactcttccaccattgta |
38849610 |
T |
|
| Q |
321 |
atacatccat |
330 |
Q |
| |
|
|||||||||| |
|
|
| T |
38849611 |
atacatccat |
38849620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 38849285 - 38849314
Alignment:
| Q |
5 |
tcttctccatctacatatcataattgaaga |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38849285 |
tcttctccatctacatatcataattgaaga |
38849314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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