View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17338_low_2 (Length: 410)
Name: NF17338_low_2
Description: NF17338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17338_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 47685218 - 47685624
Alignment:
| Q |
14 |
ctatctccttctttaacttcattgcttctgtcttcatatctatatgtgttcaatgta------------------tatggtgtcttgtattgtattcaaa |
95 |
Q |
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| T |
47685218 |
ctatctccttctttaacttcattgcttctgtcttcatatctatatgtgttcaatgtatgttacacatcacttgtatatggtgtcttgtattgtattcaaa |
47685317 |
T |
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| Q |
96 |
gcaaagctttagtcaacatagtatacatacaacttgctggcatctttttctgcttcctgggggcccttttgtgctcagcagtagaacagcacagccttgt |
195 |
Q |
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| T |
47685318 |
gcaaagctttagtcaacatagtttacatacaacttgctggcatctttctctgcttcctgggggcccttttgtgctcagcagtagaacagcacagctttgt |
47685417 |
T |
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| Q |
196 |
ttgtgggtcttcattcattcattcaagtgaagtgaattgtactcctttatttattactattatattatatacctacctgctttac-----tctcttcact |
290 |
Q |
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| T |
47685418 |
ttgtgggtcttcattcattcattcaagtgaagtgaagtgtactcctttatttattactattatattatatacctacctgctttactctcttctcttcact |
47685517 |
T |
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| Q |
291 |
ttacttgtcagtttctgctatatacctgcacttgctaggtagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcat |
390 |
Q |
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| T |
47685518 |
ttacttgtcagtttctgctatatacctgcacttgctaggtagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatcat |
47685617 |
T |
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| Q |
391 |
ctatttc |
397 |
Q |
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| T |
47685618 |
ctatttc |
47685624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 10561576 - 10561646
Alignment:
| Q |
226 |
agtgaattgtactcctttatttattactattatattatatacctacctgctttactctcttcactttactt |
296 |
Q |
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| T |
10561576 |
agtgaagtgtactcctttatttataactattatattatatacctacctgctttactctcttctcttcactt |
10561646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 388
Target Start/End: Original strand, 12282067 - 12282125
Alignment:
| Q |
330 |
tagatgctctagctaatccttagtggctgccttatgtctgctaaatattctcattcatc |
388 |
Q |
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| T |
12282067 |
tagatgctctagctaatccttagtggccggcttatgtctgttaaatattctcattcatc |
12282125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 10561914 - 10561950
Alignment:
| Q |
352 |
gtggctgccttatgtctgctaaatattctcattcatc |
388 |
Q |
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| T |
10561914 |
gtggctgccttatatctgctaaatattctcattcatc |
10561950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 14499019 - 14499103
Alignment:
| Q |
226 |
agtgaattgtactcctttatttattactattatattatatacctacctgctttac-----tctcttcactttacttgtcagtttc |
305 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
14499019 |
agtgaagtgtactcctttatttataactattatattatatacctacatgttttactctcttctcttcactttacttgtcagtttc |
14499103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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