View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17339_low_2 (Length: 326)
Name: NF17339_low_2
Description: NF17339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17339_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 33015402 - 33015170
Alignment:
| Q |
14 |
gaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggccc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33015402 |
gaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggccc |
33015303 |
T |
|
| Q |
114 |
ggcacaacaaatccacctctaactcctctaactccattaataccaagtccaccattaataccaagtccacttctaactcctccacctccattagttccaa |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33015302 |
ggcacaacaaatccacctctaa---------ctccattaataccaagtccaccattaataccaagtccacttctaactcctccagctccattagttccaa |
33015212 |
T |
|
| Q |
214 |
gtctacctccacctgtaactcctgcagctccattagtaccaa |
255 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33015211 |
gtccacctccacctgtaactcctgcagctccattagtaccaa |
33015170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 33003862 - 33003630
Alignment:
| Q |
14 |
gaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggccc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33003862 |
gaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggccc |
33003763 |
T |
|
| Q |
114 |
ggcacaacaaatccacctctaactcctctaactccattaataccaagtccaccattaataccaagtccacttctaactcctccacctccattagttccaa |
213 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| |
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| T |
33003762 |
ggcacaacaaatccacctctaa---------ctccattaataccaagtccaccattaataccaagtccagttctaattcctccagttccattagttccaa |
33003672 |
T |
|
| Q |
214 |
gtctacctccacctgtaactcctgcagctccattagtaccaa |
255 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33003671 |
gtccacctccacctgtaactcctgcagctccattagtaccaa |
33003630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 33015560 - 33015466
Alignment:
| Q |
21 |
gatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcccgg |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33015560 |
gatgcaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattccaggcattccaggatggcccgg |
33015466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 33004020 - 33003926
Alignment:
| Q |
21 |
gatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcccgg |
115 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
33004020 |
gatgcaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacttggcccggtattccaggcattccaggatggcccgg |
33003926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 33015732 - 33015631
Alignment:
| Q |
14 |
gaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggccc |
113 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||| |
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| T |
33015732 |
gaatggcgatgcaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcctggtatttcgggcattcctggatggccc |
33015633 |
T |
|
| Q |
114 |
gg |
115 |
Q |
| |
|
|| |
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|
| T |
33015632 |
gg |
33015631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 33004192 - 33004091
Alignment:
| Q |
14 |
gaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggccc |
113 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||| |
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| T |
33004192 |
gaatggcgatccaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcctggtatttcgggcattcctggatggccc |
33004093 |
T |
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| Q |
114 |
gg |
115 |
Q |
| |
|
|| |
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|
| T |
33004092 |
gg |
33004091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 33015918 - 33015844
Alignment:
| Q |
20 |
tgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcc |
94 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33015918 |
tgatgcaagttcggattgtttcaatatacctggacttcccggtgttccaggcctaccaacatggcccggtattcc |
33015844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 33004378 - 33004304
Alignment:
| Q |
20 |
tgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcc |
94 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
33004378 |
tgatgcaagttcggattgtttcaatatacctggacttcccggtgttccaggcctaccgacatggcccggtattcc |
33004304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 33004314 - 33004256
Alignment:
| Q |
57 |
cccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcccgg |
115 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33004314 |
cccggtattccaggcctaccgacatggcccggtattccaggcattccaggatggcccgg |
33004256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 33015854 - 33015796
Alignment:
| Q |
57 |
cccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcccgg |
115 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
33015854 |
cccggtattccaggcctaccgacatggcccggtattccaggcattccaggatggcccgg |
33015796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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