View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17339_low_4 (Length: 275)
Name: NF17339_low_4
Description: NF17339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17339_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 33959451 - 33959177
Alignment:
| Q |
1 |
aaataaaccaaaaatttgttcatcgcactttcagaacatttagatttacttacaaaagctagatacccaaaactagagcttgattacaactccttcaaaa |
100 |
Q |
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| T |
33959451 |
aaataaaccaaaaatttgttcatcgcactttcagaacatttagatttacttacaaaagctagatgcccaaaactagagcttgattacaactccttcaaaa |
33959352 |
T |
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| Q |
101 |
ataccatcagacctaaagttaggtgcaaagagccttggatcaacaggtcctggaagactgaatgaaattgtgaatggcccaggagagcataactgatggg |
200 |
Q |
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| T |
33959351 |
ataccatcagacctaaagttaggtgcaaagagtcttggatcaacaggtcctggaagactgaatgaaattgtgaatggcccaggagagcataactgatggg |
33959252 |
T |
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| Q |
201 |
ttttcatttggaaaagacgtgactgtctcgctatagttcttccaccagataacaaccctctgatctcaaccttcc |
275 |
Q |
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| T |
33959251 |
ttttcatttggaaaagacgtgactgtctcgctatagttcttccaccagataacaaccctctgatctcaaccttcc |
33959177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 935059 - 934795
Alignment:
| Q |
11 |
aaaatttgttcatcgcactttcagaacatttagatttacttacaaaagctagatacccaaaactagagcttgattacaactccttcaaaaataccatcag |
110 |
Q |
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||||||||| | || ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
935059 |
aaaatttgtgcgtcacactttcggaacatttagatttacgtacaaaagctagatgcccaaaactagagcttgataacaactccttcaaaaatgccatcat |
934960 |
T |
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| Q |
111 |
acctaaagttaggtgcaaagagccttggatcaacaggtcctggaagactgaatgaaattgtgaatggcccaggagagcataactgatgggttttcatttg |
210 |
Q |
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| T |
934959 |
ccctaaagttaggtgcaaagagtcttggatcaacaggtcctggaagactgaatgaaattgtgaatggtccaggagagcacaactgctgggttttcatctg |
934860 |
T |
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| Q |
211 |
gaaaagacgtgactgtctcgctatagttcttccaccagataacaaccctctgatctcaaccttcc |
275 |
Q |
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| T |
934859 |
gaaaacacgcgactgtgttgctatagttcttataccagataacaaccctctgatctcaaccttcc |
934795 |
T |
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