View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_high_1 (Length: 486)
Name: NF1733_high_1
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 24358432 - 24357993
Alignment:
| Q |
18 |
gtaaaaacaacgacttaatttagaaaaagggaagacattccaaacacattttcttaagttcttaccatgtaaaattcctgcatactgtggagcaatgtcc |
117 |
Q |
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| T |
24358432 |
gtaaaaacaacgacttaatttagaaaaagggaagacattccaaacacattttcttaagttcttaccatgtaaaattcctgcatactgtggagcaatgtcc |
24358333 |
T |
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| Q |
118 |
tgaatatgtaaaatgtgaaaggttactcatatatttctaagttcatgaaatgtcataaatataatgtttaaagttttagagtatattcagatttttgtgt |
217 |
Q |
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| T |
24358332 |
tgaatatgtaaaatgtgaaaggttactgatatatttctaagttcatgaaatgtcataaatataat-------------------attcagatttttgtgt |
24358252 |
T |
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| Q |
218 |
gctggacttacttgtatgttgagcataaaaccagcttgactgaaagagcttaagcttaaagctgcagtcaagagtgtagctgccattgttggtgtattgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358251 |
gctggacttacttgtatgttgagcataaaaccagcttgactgaaagagcttaagcttaaagctgcagtcaagagtgtagctgccattgttggtgtattgg |
24358152 |
T |
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| Q |
318 |
cgtaattcaagcagatcaaggtaacagctggccccataaatccaattgtctgcaattttatatattgcattactaaaaatcaacatgaataaggaaagag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358151 |
cgtaattcaagcagatcaaggtaacagctggccccataaatccaattgtctgcaattttatatattgcattactaaaaatcaacatgaataaggaaagag |
24358052 |
T |
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| Q |
418 |
tttccggtacttaatatgaattccatctatttttggtctataattgctttctgtctgtg |
476 |
Q |
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| T |
24358051 |
tttccggtacttaatatgaattccatctatttttggtctataattgctatctgtctgtg |
24357993 |
T |
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