View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_high_10 (Length: 227)
Name: NF1733_high_10
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42186782 - 42186562
Alignment:
| Q |
1 |
caccaccaatccgaacatgcactaacatgaaatttttccagttttgatattattggttacttgtcactgctatctttcttacctcttcaggagatacccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42186782 |
caccaccaatccgaacatgcactaacatgaaatttttccagttttgatattattggttacttgtcactgctatctttcttacctcttcaggagaaacccc |
42186683 |
T |
|
| Q |
101 |
agcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186682 |
agcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaa |
42186583 |
T |
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| Q |
201 |
tattcagcaattattcttgct |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42186582 |
tattcagcaattattcttgct |
42186562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 42196470 - 42196323
Alignment:
| Q |
79 |
ttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagcatc |
178 |
Q |
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||||||||||||| || ||||| |||| |||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||| |
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| T |
42196470 |
ttacctcttcaggggaaaccccggcattttctaaactcttgtttatgcaagatgaaacaccaagtccatcagaccttggatcagtcatgtgatgagcatc |
42196371 |
T |
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| Q |
179 |
-----acatgttatggcaccacccaaatattcagcaattattcttgct |
221 |
Q |
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| T |
42196370 |
acatcacatgttatggcaccacccaaatattcagcaattatttttgct |
42196323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 42203874 - 42203730
Alignment:
| Q |
77 |
tcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagca |
176 |
Q |
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||||||||||| ||| || ||||||||||||| ||||| |||| |||||||||| || ||| |||||||||| | |||| |||||| ||||||||| |
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| T |
42203874 |
tcttacctcttgaggggaaaccccagcatcttgtaaactcttgcttatgcaagaggactgtccaagtccatcaggcattggattagtcatatgatgagca |
42203775 |
T |
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| Q |
177 |
tcacatgttatggcaccacccaaatattcagcaattattcttgct |
221 |
Q |
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||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
42203774 |
tcacatgttatggcaccacccaaatattctgccagtattcttgct |
42203730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 46610573 - 46610643
Alignment:
| Q |
141 |
agtccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaatattcagcaat |
211 |
Q |
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||||| |||||||| |||||||||||||||| ||||||||| | | ||||| ||||||||||||||||| |
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| T |
46610573 |
agtccgtcagatcttggatcagtcatgtgataagcatcacagttaacagcacctcccaaatattcagcaat |
46610643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 38472748 - 38472681
Alignment:
| Q |
144 |
ccatcagatctaggatcagtcatgtgatgagcatcacatgttatggcaccacccaaatattcagcaat |
211 |
Q |
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||||||||||| ||||||||||| |||| ||||||||| ||| ||||| ||||| ||||||||||| |
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| T |
38472748 |
ccatcagatcttggatcagtcatatgataagcatcacagtttacagcacctcccaagtattcagcaat |
38472681 |
T |
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