View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_high_11 (Length: 225)
Name: NF1733_high_11
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 6125475 - 6125683
Alignment:
| Q |
5 |
tcccatttgttcatatgctctaaactctttcctatctcatctatttcacgagcaatttgtaaccgaaaaacaaatgcattaatgcaagaaaataaactgc |
104 |
Q |
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| T |
6125475 |
tcccatttgatcatatactctaaattctttcctatctcatctatttcacgagcaatttgtaactgaaaaacaaatgcattaatgcaagaaaataaactgc |
6125574 |
T |
|
| Q |
105 |
gtaccttcccaccatcaagacgcaaaatttcggtagcaatttcatcgaagaagtcatcagcagcataaacctgatcttttatctctcttatccaatcctt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6125575 |
gtaccttcccaccatcaagacgcaaaatttcggtagcaatttcatcgaagaagtcatcagcagcataaacctgatcttttatctctcttatccaatcctt |
6125674 |
T |
|
| Q |
205 |
gtcaatttt |
213 |
Q |
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| T |
6125675 |
gtcaatttt |
6125683 |
T |
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