View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_low_2 (Length: 434)
Name: NF1733_low_2
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_low_2 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 5823100 - 5822841
Alignment:
| Q |
22 |
aggccacatagcatctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggccaaatggtcttt |
121 |
Q |
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| T |
5823100 |
aggccacatagcatctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggtcaaatggtcttt |
5823001 |
T |
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| Q |
122 |
tcatgaattgttcacttttgtagatggctgtggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgc |
221 |
Q |
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| T |
5823000 |
tcatgaattgtt-tct----------gctttgataactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgc |
5822912 |
T |
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| Q |
222 |
cttacccttgtccaaattaggcacgtacct-----atttcatccaaattaagaaatgttatttgataaaat |
287 |
Q |
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| T |
5822911 |
cttacccttgtccaaattaggcacatacctaattcaattcaaccaaattaagaaatgttagttgataaaat |
5822841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 5832966 - 5833182
Alignment:
| Q |
22 |
aggccacatagcatctgagtgtacatgctttggaatgaatctaaacatgagatggcttcatttgggcttgttagaacattgtaagggccaaatggtcttt |
121 |
Q |
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| T |
5832966 |
aggccacaaagcatctgagtatacatgctttgaaatgaatcaggacaaaggatagcttcatctggacttgttaacacattgtaagggtcaaatggtcttt |
5833065 |
T |
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| Q |
122 |
tcatgaattgttcacttttgtagatggctgtggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgc |
221 |
Q |
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| T |
5833066 |
tcttaaactgttcacttttgtagtaggctgttagaactggacgtgccactaacccacttggagtttttgtttctgctttgatgaaaagaaagtgaagtgc |
5833165 |
T |
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| Q |
222 |
cttacccttgtccaaat |
238 |
Q |
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| T |
5833166 |
ttttcctttgtccaaat |
5833182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 16256614 - 16256678
Alignment:
| Q |
352 |
aagtttggatggaggtgatgaattggatgcaattcaattttataactcctcctaatttgattatt |
416 |
Q |
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| T |
16256614 |
aagtttagagggaggtgatgaattggatacaattcaattttattactcctcctgatttgattatt |
16256678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 77870 - 77830
Alignment:
| Q |
19 |
atgaggccacatagcatctgagtgtacatgctttggaatga |
59 |
Q |
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| T |
77870 |
atgagtccacatagcatttgagtatacatgctttggaatga |
77830 |
T |
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