View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1733_low_4 (Length: 408)

Name: NF1733_low_4
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1733_low_4
NF1733_low_4
[»] chr3 (5 HSPs)
chr3 (30-222)||(36147352-36147544)
chr3 (225-394)||(36147511-36147680)
chr3 (230-376)||(36081025-36081168)
chr3 (134-222)||(36080966-36081053)
chr3 (249-298)||(36157808-36157857)
[»] chr6 (2 HSPs)
chr6 (50-99)||(26528508-26528557)
chr6 (159-222)||(26528372-26528435)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 36147352 - 36147544
Alignment:
Q  30 tatcacatttcacttatatttatatctatcatatatattgtagactcaactggaacaatgattgaaactcaaaacaaacaattgagatgtacgaaagact 129  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36147352 tatcgcatttctcttatatgtatatctatcatatatattgtagactcaactggaacaatgattgaaactcaaaacaaacaattgagatgtacgaaagact 36147451  T
Q  130 atagaagtgtaactaagttctnnnnnnnngtgtaattaagtctttatgaaattctaacaattgtactaatttatacgaggtcttaagataata 222  Q
    ||| |||||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36147452 ataaaagtgtaactaagttctaaaaaaaagtgtaattaagtctttatgaaattctaacaattgtattaatttatacgaggtcttaagataata 36147544  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 225 - 394
Target Start/End: Original strand, 36147511 - 36147680
Alignment:
Q  225 attgtactaatttatacaaggtcttaagataatacgtagaagatatttaaaacaataatgttttacttatagatagnnnnnnnataagcaattttattta 324  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  36147511 attgtattaatttatacgaggtcttaagataatacgtagaagatatttaaaacaataatgttttacttatagatagtttttttataagcaattttattta 36147610  T
Q  325 tttattaagggagtattataggtactccaaacccattttaaggcactccaagcccactcacttatagatg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36147611 tttattaagggagtattataggtactccaaacccattttaaggcactccatgcccactcacttatagatg 36147680  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 36081025 - 36081168
Alignment:
Q  230 actaatttatacaaggtcttaagataatacgtagaagatatttaaaacaataatgttttacttatagatagnnnnnnnataagcaattttatttatttat 329  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |       |||||||| |  |||  |||||    
T  36081025 actaatttatacgaggtcttaagataatacgtagaa-atatttaaaacaataatgttttacttatatattgtttttttataagcaaataaatt--tttat 36081121  T
Q  330 taagggagtattataggtactccaaacccattttaaggcactccaag 376  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  36081122 taagggagtattagaggtactgcaagcccattttaaggcacttcaag 36081168  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 36080966 - 36081053
Alignment:
Q  134 aagtgtaactaagttctnnnnnnnngtgtaattaagtctttatgaaattctaacaattgtac--taatttatacgaggtcttaagataata 222  Q
    |||||||||||||||||        ||| ||||||||||||| |||||   |||||||||||  |||||||||||||||||||||||||||    
T  36080966 aagtgtaactaagttctaaaaagaagtgcaattaagtctttacgaaat---aacaattgtacactaatttatacgaggtcttaagataata 36081053  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 36157808 - 36157857
Alignment:
Q  249 taagataatacgtagaagatatttaaaacaataatgttttacttatagat 298  Q
    ||||||||| | ||| |||||||||||||||||| ||||| |||||||||    
T  36157808 taagataatgcatagtagatatttaaaacaataacgttttgcttatagat 36157857  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 26528557 - 26528508
Alignment:
Q  50 tatatctatcatatatattgtagactcaactggaacaatgattgaaactc 99  Q
    ||||||||| |||||||||||||||||||| ||| ||| |||||||||||    
T  26528557 tatatctattatatatattgtagactcaacaggagcaacgattgaaactc 26528508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 26528435 - 26528372
Alignment:
Q  159 gtgtaattaagtctttatgaaattctaacaattgtactaat---ttatacgaggtcttaagataata 222  Q
    |||||||||| || |||||||||   |||||||||||||||   |||||||||||||||||||||||    
T  26528435 gtgtaattaaatccttatgaaat---aacaattgtactaataatttatacgaggtcttaagataata 26528372  T

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