View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_low_5 (Length: 407)
Name: NF1733_low_5
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 279470 - 279700
Alignment:
| Q |
9 |
gattattctatgaacgtctcttacgaagatctcgatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttct |
108 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279470 |
gattattctatgaacgtctcttacgaaggtctcaatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttct |
279569 |
T |
|
| Q |
109 |
gcaaccttttttgctttgttctcaagtgaactaaaagtatttttaatagcttatgctagcttgatggtttgatagaaaaagaatttctctgaaatgattt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279570 |
gcaaccttttttgctttgttctcaagtgaactaaaagtatttttaatagcttatgctagcttgatggtttgatagaaaaagaatttctctgaaatgattt |
279669 |
T |
|
| Q |
209 |
caacactcgtgtaaaacacactatctctctc |
239 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
279670 |
caacactcgtgtaaaacacactatctctctc |
279700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 636382 - 636152
Alignment:
| Q |
9 |
gattattctatgaacgtctcttacgaagatctcgatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttct |
108 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
636382 |
gattattctatgaacgtctcttacgaaggtctcaatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttct |
636283 |
T |
|
| Q |
109 |
gcaaccttttttgctttgttctcaagtgaactaaaagtatttttaatagcttatgctagcttgatggtttgatagaaaaagaatttctctgaaatgattt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
636282 |
gcaaccttttttgctttgttctcaagtgaactaaaagtatttttaatagcttatgctagcttgatggtttgatagaaaaagaatttctctgaaatgattt |
636183 |
T |
|
| Q |
209 |
caacactcgtgtaaaacacactatctctctc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
636182 |
caacactcgtgtaaaacacactatctctctc |
636152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 822185 - 821955
Alignment:
| Q |
9 |
gattattctatgaacgtctcttacgaagatctcgatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
822185 |
gattattctatgaacgtctcttacgaaggtctcaatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttct |
822086 |
T |
|
| Q |
109 |
gcaaccttttttgctttgttctcaagtgaactaaaagtatttttaatagcttatgctagcttgatggtttgatagaaaaagaatttctctgaaatgattt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
822085 |
gcaaccttttttgctttgttctcaagtgaactaaaagtatttttaatagcttatgctagcttgatggtttgatagaaaaagaatttctctgaaatgattt |
821986 |
T |
|
| Q |
209 |
caacactcgtgtaaaacacactatctctctc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
821985 |
caacactcgtgtaaaacacactatctctctc |
821955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 279780 - 279887
Alignment:
| Q |
285 |
cgtaagttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttccct--tatatatatgaaaaaagatacaata |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
279780 |
cgtaagttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttcccttatatatatatgaaaaaagatacagta |
279879 |
T |
|
| Q |
383 |
tataaatg |
390 |
Q |
| |
|
|||||||| |
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|
| T |
279880 |
tataaatg |
279887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 636072 - 635965
Alignment:
| Q |
285 |
cgtaagttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttcccttatat--atatgaaaaaagatacaata |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
636072 |
cgtaagttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttcccttatatatatatgaaaaaagatacagta |
635973 |
T |
|
| Q |
383 |
tataaatg |
390 |
Q |
| |
|
|||||||| |
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|
| T |
635972 |
tataaatg |
635965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 821875 - 821768
Alignment:
| Q |
285 |
cgtaagttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttcccttatat--atatgaaaaaagatacaata |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
821875 |
cgtaagttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttcccttatatatatatgaaaaaagatacagta |
821776 |
T |
|
| Q |
383 |
tataaatg |
390 |
Q |
| |
|
|||||||| |
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|
| T |
821775 |
tataaatg |
821768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 2623266 - 2623338
Alignment:
| Q |
286 |
gtaagttttaaaattagagggg-tgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttccct |
357 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||| |||| | ||||||||| || ||||||||||||||| |
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|
| T |
2623266 |
gtaagttttaaaattagatgggatgtcagtgtcattttaataaaccttaggggaagcagatgtaattttccct |
2623338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 24787428 - 24787570
Alignment:
| Q |
11 |
ttattctatgaacgtctcttacgaagatctcgatttcatgagggaaaatgggatacaggacttaatattcaaactatgaataacttttcatactttctgc |
110 |
Q |
| |
|
||||||| |||||||||| ||||| ||||| |||| ||||||| | || ||| || |||||||||| | |||| |||||||| |||| |||||| | || |
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| T |
24787428 |
ttattctttgaacgtctccgacgaatatctc-attttatgaggggacattggagacgggacttaatagttaaacaatgaataaattttaatacttgcagc |
24787526 |
T |
|
| Q |
111 |
aaccttttttgctttgttctcaagtgaactaaaagtatttttaa |
154 |
Q |
| |
|
||||||| ||||| ||||||||||||| || ||||||||||||| |
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|
| T |
24787527 |
aacctttattgctctgttctcaagtgatctgaaagtatttttaa |
24787570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 45145921 - 45145849
Alignment:
| Q |
289 |
agttttaaaattagaggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttcccttata |
361 |
Q |
| |
|
|||||||||| ||||||||| || | |||||| |||| | |||||||||| | |||||||||||||||||| |
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|
| T |
45145921 |
agttttaaaactagaggggtctaactatcattttaataaactttaggggaggtgaatgtaattttcccttata |
45145849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 12007934 - 12008008
Alignment:
| Q |
286 |
gtaagttttaaaattaga-ggggtgtatgtgtcatttcaatagaacttaggggaggcggatgtaattttccctta |
359 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| | || | ||||||||||| | ||||||||||||||| |
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|
| T |
12007934 |
gtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccctta |
12008008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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