View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1733_low_6 (Length: 334)

Name: NF1733_low_6
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1733_low_6
NF1733_low_6
[»] chr4 (3 HSPs)
chr4 (18-325)||(2878801-2879108)
chr4 (180-325)||(2895797-2895942)
chr4 (176-325)||(2888427-2888576)
[»] chr2 (4 HSPs)
chr2 (267-325)||(44232532-44232590)
chr2 (198-325)||(44209500-44209627)
chr2 (264-319)||(43455647-43455702)
chr2 (198-325)||(44221714-44221841)
[»] chr7 (6 HSPs)
chr7 (262-327)||(39536634-39536699)
chr7 (252-327)||(39545951-39546026)
chr7 (261-327)||(39340177-39340243)
chr7 (261-310)||(1083275-1083324)
chr7 (263-311)||(39354999-39355047)
chr7 (243-327)||(39562757-39562841)
[»] chr8 (1 HSPs)
chr8 (244-308)||(4502991-4503055)
[»] chr1 (2 HSPs)
chr1 (186-310)||(2147390-2147514)
chr1 (240-310)||(2159261-2159331)
[»] chr3 (1 HSPs)
chr3 (192-307)||(49774608-49774723)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 2878801 - 2879108
Alignment:
Q  18 ggacgcaaatagtaagtgaaaacttccaaaatctataaatatgacaatagcttattgaatttgcacttaatcaaaatatttatccaaacaccgtttagtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878801 ggacgcaaatagtaagtgaaaacttccaaaatctataaatatgacaatagcttattgaatttgcacttaatcaaaatatttatccaaacaccgtttagtt 2878900  T
Q  118 gatatttcatttccacttgaattgtgatgcctttcgtggattccagcacaagaggactagacctgtctaatgccatgggctcaatgtacactgctgtttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878901 gatatttcatttccacttgaattgtgatgcctttcgtggattccagcacaagaggactagacctgtctaatgccatgggctcaatgtacactgctgtttt 2879000  T
Q  218 cttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgcctta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879001 cttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgcctta 2879100  T
Q  318 ccctatgc 325  Q
    ||||||||    
T  2879101 ccctatgc 2879108  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 2895942 - 2895797
Alignment:
Q  180 ctgtctaatgccatgggctcaatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttt 279  Q
    |||| ||||||| | || || ||||| ||||||||| ||||| |||||||||| |||||| | || |||||||| || ||||||||||||||| |||| |    
T  2895942 ctgtttaatgccctcggttcgatgtatactgctgttctcttccttggggtccagaattcatcgtctgtacaacccgtggtagctgttgaaagatctgtct 2895843  T
Q  280 tttatagagaaagagctgctggaatgtattctgccttaccctatgc 325  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  2895842 tctatagagaaagagctgctggaatgtattctgccttaccctatgc 2895797  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 325
Target Start/End: Original strand, 2888427 - 2888576
Alignment:
Q  176 agacctgtctaatgccatgggctcaatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaact 275  Q
    |||||||| ||||||| | || || ||||| ||||||||| ||||| |||||||||| |||||| |  | ||||||||||| ||||| ||||||||| ||    
T  2888427 agacctgtttaatgccctcggttcgatgtatactgctgttctcttccttggggtccagaattcatcagctgtacaaccagtggtagcagttgaaagatct 2888526  T
Q  276 gttttttatagagaaagagctgctggaatgtattctgccttaccctatgc 325  Q
    || || |||||||||||||||||||| ||||||||||||||||| |||||    
T  2888527 gtgttctatagagaaagagctgctgggatgtattctgccttaccttatgc 2888576  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 44232590 - 44232532
Alignment:
Q  267 gaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgc 325  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  44232590 gaaagaactgtattttatagagaaaaagctgctggaatgtactctgccttaccctatgc 44232532  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 44209627 - 44209500
Alignment:
Q  198 tcaatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctg 297  Q
    |||||||| || |||||| ||||| |||| || ||||||||  | || || || || || || || || ||||||||||| ||| ||||||||| |||||    
T  44209627 tcaatgtataccgctgttctcttccttggagtgcaaaattcttcttctgtgcagccggtggttgcagtggaaagaactgtatttaatagagaaaaagctg 44209528  T
Q  298 ctggaatgtattctgccttaccctatgc 325  Q
    |||||||||| |||||||||||||||||    
T  44209527 ctggaatgtactctgccttaccctatgc 44209500  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 43455702 - 43455647
Alignment:
Q  264 gttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttacc 319  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||| |||||    
T  43455702 gttgaaagaactgtattctatcgagaaagagctgctggaatgtattctgctttacc 43455647  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 44221841 - 44221714
Alignment:
Q  198 tcaatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctg 297  Q
    |||||||| || |||||| ||||| |||| || ||||||||  | || || || || || || || |||||||| ||||| |||||| ||||||  ||||    
T  44221841 tcaatgtataccgctgttctcttccttggagtacaaaattcttcttctgtgcagccggtggttgcagttgaaaggactgtattttatcgagaaaaggctg 44221742  T
Q  298 ctggaatgtattctgccttaccctatgc 325  Q
    |||||||||||||||||||||| |||||    
T  44221741 ctggaatgtattctgccttaccatatgc 44221714  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 39536699 - 39536634
Alignment:
Q  262 ctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgctt 327  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||| || || || |||||||    
T  39536699 ctgttgaaagaacagtcttttatagagaaagagcggctggaatgtattcagctttgccgtatgctt 39536634  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 39546026 - 39545951
Alignment:
Q  252 ccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgctt 327  Q
    ||||| ||||||||||||||||| || |||||| |||||||||| || ||||||||||| || || || |||||||    
T  39546026 ccagtggtagctgttgaaagaacggtcttttatcgagaaagagcagccggaatgtattcagcttttccatatgctt 39545951  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 39340177 - 39340243
Alignment:
Q  261 gctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgctt 327  Q
    |||||||||||||| || ||||||||||||||||| || ||||||||||| || || || |||||||    
T  39340177 gctgttgaaagaacggtcttttatagagaaagagcggccggaatgtattcagcttttccatatgctt 39340243  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 1083324 - 1083275
Alignment:
Q  261 gctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 310  Q
    |||||||||||||| || ||||||||||||||||| || |||||||||||    
T  1083324 gctgttgaaagaaccgtcttttatagagaaagagcagccggaatgtattc 1083275  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 39354999 - 39355047
Alignment:
Q  263 tgttgaaagaactgttttttatagagaaagagctgctggaatgtattct 311  Q
    |||||||||||| || ||||||||||||||||| || ||||||||||||    
T  39354999 tgttgaaagaacggtcttttatagagaaagagcagccggaatgtattct 39355047  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 39562841 - 39562757
Alignment:
Q  243 tcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgctt 327  Q
    ||||| || ||||| || ||||| |||||||| || ||||||||||||||||| || ||||||||||| || || || |||||||    
T  39562841 tcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgctt 39562757  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 4502991 - 4503055
Alignment:
Q  244 cagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtat 308  Q
    |||| |||||||| |||||  |||||||||| || || |||||||||||||||||||||||||||    
T  4502991 cagttcaaccagttgtagccattgaaagaacagtgttctatagagaaagagctgctggaatgtat 4503055  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 2147514 - 2147390
Alignment:
Q  186 aatgccatgggctcaatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttata 285  Q
    ||||| ||||| ||||||||  ||||||||  |||||| |||||   ||||   ||||| ||||||||| |||||||  |||| ||||| || || || |    
T  2147514 aatgcaatggggtcaatgtatgctgctgttaccttcataggggttgtaaatggtgcctcggtacaaccaatagtagcaattgagagaacagtcttctaca 2147415  T
Q  286 gagaaagagctgctggaatgtattc 310  Q
    ||||||||||||| |||||||||||    
T  2147414 gagaaagagctgcaggaatgtattc 2147390  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 2159331 - 2159261
Alignment:
Q  240 gcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 310  Q
    |||||||| || || ||| |||| ||||| ||||| || || || ||||||||||||||||||||||||||    
T  2159331 gcctcagtgcagcctgtaatagcagttgagagaacagtcttctacagagaaagagctgctggaatgtattc 2159261  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 307
Target Start/End: Original strand, 49774608 - 49774723
Alignment:
Q  192 atgggctcaatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaa 291  Q
    ||||| || |||||| |||| ||  ||||||||||||| |||||| |  | || || |||||||| |||||  |||| ||||| ||||| ||||||||||    
T  49774608 atggggtccatgtacgctgcagtgctcttcattggggtacaaaatgctacatcggtgcaaccagttgtagccattgagagaacagttttctatagagaaa 49774707  T
Q  292 gagctgctggaatgta 307  Q
      ||||||||||||||    
T  49774708 aggctgctggaatgta 49774723  T

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