View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_low_7 (Length: 277)
Name: NF1733_low_7
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 42639354 - 42639097
Alignment:
| Q |
7 |
gcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagacaa |
106 |
Q |
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| T |
42639354 |
gcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaactatcttggaactacaactatggaccagctggaagagacaa |
42639255 |
T |
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| Q |
107 |
tggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgtc |
206 |
Q |
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| T |
42639254 |
tggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataacgtgcacggtgtc |
42639155 |
T |
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| Q |
207 |
atcaaccaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatg |
264 |
Q |
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| T |
42639154 |
atcaaccaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatg |
42639097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 42634278 - 42634019
Alignment:
| Q |
6 |
agcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagaca |
105 |
Q |
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| T |
42634278 |
agcaacacagagtacccgtgtgcccctaacaaaggatactatggccgtggaccgattcaattatcttggaactttaattacggaccagctggaaaggaca |
42634179 |
T |
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| Q |
106 |
atggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgt |
205 |
Q |
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| T |
42634178 |
gtggttttgatgaattgaactctcctgaaacagtggccaatgatcctttagtgtccttcaagacagcattatggtattggatgaatcatgtgcacaatgt |
42634079 |
T |
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| Q |
206 |
catcaac---caaggttttggtgcaaccattagagccattaatggtcgacttgaatgtga |
262 |
Q |
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| T |
42634078 |
catgaaccaacaaggctttggtgcaacggttagagccattaatggtcgacttgaatgtga |
42634019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 42628551 - 42628498
Alignment:
| Q |
211 |
accaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatg |
264 |
Q |
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| T |
42628551 |
accaaggctttggtgcaaccactagagccattaatggtcgacttgaatgtgatg |
42628498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 42628638 - 42628588
Alignment:
| Q |
102 |
gacaatggttttgatggattgaactcacctgaaacagtggccaatgatcct |
152 |
Q |
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| T |
42628638 |
gacaatggttctgatggattgaactctcctgaaacagtggccaatgatcct |
42628588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 42628694 - 42628651
Alignment:
| Q |
22 |
catgtgcccctaacaaaggttactatggtcgtggaccgattcaa |
65 |
Q |
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| T |
42628694 |
catgtgcccctaacaaagggttctatggttgtggaccgattcaa |
42628651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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