View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1733_low_8 (Length: 236)
Name: NF1733_low_8
Description: NF1733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1733_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25741379 - 25741159
Alignment:
| Q |
1 |
ttcgaatatcattgaaaacaagcattgctgcccattacctgaactgcctagcttgagtacaaaaattttgcatcgcgttaggacaccactgttgagggat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25741379 |
ttcgaatatcattgaaaacaaacattgctgcccattaccagaactgcctagcttgagtacaaaaagtttgcatcgcgttaggacaccactgttgagggat |
25741280 |
T |
|
| Q |
101 |
aatacatgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgtta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741279 |
aatacatgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaaggttttgcaaaaattttctttttgaatccagtgactgatgtta |
25741180 |
T |
|
| Q |
201 |
gaatcacgataccatcaaagt |
221 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
25741179 |
gaatcactataccatcaaagt |
25741159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25733678 - 25733458
Alignment:
| Q |
1 |
ttcgaatatcattgaaaacaagcattgctgcccattacctgaactgcctagcttgagtacaaaaattttgcatcgcgttaggacaccactgttgagggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
25733678 |
ttcgaatatcattgaaaacaagcattgctgcccattacctgaactgcctagcttgagtacaaaaagtttgcatcgtgttaggacaccactgttgagggat |
25733579 |
T |
|
| Q |
101 |
aatacatgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||| |||||||| |
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| T |
25733578 |
aatacatgtattggctcagttgacggctggttgattgtgagtgactattctgaaaaaggttttgcaaaagttttctttttgaatcccgtgagtgatgtta |
25733479 |
T |
|
| Q |
201 |
gaatcacgataccatcaaagt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
25733478 |
gaatcacgataccatcaaagt |
25733458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 25747539 - 25747329
Alignment:
| Q |
11 |
attgaaaacaagcattgctgcccattacctgaactgcctagcttgagtacaaaaattttgcatcgcgttaggacaccactgttgagggataatacatgta |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||| |||| ||||| |
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| T |
25747539 |
attgaaaacaagcattgctgccctttacctgaactgcctagcttgagtacaaaaagtttacattgccttaggacaccactgttgaattcaaataaatgta |
25747440 |
T |
|
| Q |
111 |
ttggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgttagaatcacgat |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25747439 |
ttggctcagtggacggctggttgattgtgagtgacaattctgaaaaaggttttgcaaaaattttctttttgaatccagtaactgatgttagaatcacgat |
25747340 |
T |
|
| Q |
211 |
accatcaaagt |
221 |
Q |
| |
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|||||| |||| |
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|
| T |
25747339 |
accatcgaagt |
25747329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 25756113 - 25755897
Alignment:
| Q |
5 |
aatatcattgaaaacaagcattgctgcccattacctgaactgcctagcttgagtacaaaaattttgcatcgcgttaggacaccactgttgagggataata |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | || |||| ||||||||||||| | ||||| |
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|
| T |
25756113 |
aatatcattgaaaacaagcattgctgcccattacctgaaatgcctagcttgagtacaaaaagtttactttgccttagaacaccactgttgaagtctaata |
25756014 |
T |
|
| Q |
105 |
catgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgttagaat |
204 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25756013 |
aatgtattggctcagttgaaggttggttgattgtggttgacaactctgataaaggttttgcaaaatttttctttttgaatccagtgactgatgttagaat |
25755914 |
T |
|
| Q |
205 |
cacgataccatcaaagt |
221 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
25755913 |
cacaataccatcaaagt |
25755897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 25764066 - 25763850
Alignment:
| Q |
5 |
aatatcattgaaaacaagcattgctgcccattacctgaactgcctagcttgagtacaaaaattttgcatcgcgttaggacaccactgttgagggataata |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||| ||| | ||||||| ||||||||| ||| ||| |
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|
| T |
25764066 |
aatatcattgaaaacaagcattgctcccctttacctgaactgcctagcttgactacaaaaagtttacattaccttaggacttcactgttgaatgatgata |
25763967 |
T |
|
| Q |
105 |
catgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgttagaat |
204 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
25763966 |
tatgtattggctcaattgaaggctggttgattgtgtgtgacaattttggaaaaggttttgcaaagtttttctttttgaatccagtgactaatgttagaat |
25763867 |
T |
|
| Q |
205 |
cacgataccatcaaagt |
221 |
Q |
| |
|
||||||||||||||||| |
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| T |
25763866 |
cacgataccatcaaagt |
25763850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 40462558 - 40462485
Alignment:
| Q |
111 |
ttggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaat |
184 |
Q |
| |
|
|||||||| |||| ||||||||||| ||| ||||| |||| || ||| ||||||||||| |||||| |||||| |
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|
| T |
40462558 |
ttggctcaattgaaggctggttgatcgtgggtgacttttctcaagaaggttttgcaaaaaatttcttcttgaat |
40462485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 8294478 - 8294591
Alignment:
| Q |
106 |
atgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgttagaatc |
205 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
8294478 |
atgtgttggctcagttgaaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatc |
8294577 |
T |
|
| Q |
206 |
acgataccatcaaa |
219 |
Q |
| |
|
| |||||||||||| |
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|
| T |
8294578 |
atgataccatcaaa |
8294591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 30148941 - 30149062
Alignment:
| Q |
99 |
ataatacatgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgt |
198 |
Q |
| |
|
|||||| |||| |||| |||||||| ||||||||||||||| ||||| ||||||||| | |||||||||||||||||| | |||||| ||| |||||| |
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|
| T |
30148941 |
ataatagatgtcttgggtcagttgaaggctggttgattgtgggtgacctttctgaaaagggttttgcaaaaattttcttctcaaatccaatgaatgatgt |
30149040 |
T |
|
| Q |
199 |
tagaatcacgataccatcaaag |
220 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30149041 |
tagaatcacgataccatcaaag |
30149062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 30153662 - 30153783
Alignment:
| Q |
99 |
ataatacatgtattggctcagttgacggctggttgattgtgagtgacaattctgaaaaagattttgcaaaaattttctttttgaatccagtgactgatgt |
198 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||||||| ||||| ||| ||||| | |||||| ||| ||||||| | |||||||| | |||||| |
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|
| T |
30153662 |
ataatagatgtcttggctcagttgaaggctggttgattgtgggtgacttttccgaaaagggttttgcgaaatttttcttctcaaatccagtaaatgatgt |
30153761 |
T |
|
| Q |
199 |
tagaatcacgataccatcaaag |
220 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30153762 |
tagaatcacgataccatcaaag |
30153783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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