View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734-Insertion-1 (Length: 474)
Name: NF1734-Insertion-1
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 458
Target Start/End: Complemental strand, 8677156 - 8676704
Alignment:
| Q |
7 |
agggtgacatataaatgagccatcaatctgaggagattcgatcaaattcatttt-gatttaaaacttttaacaattgaatttcaannnnnnnggcatgat |
105 |
Q |
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| T |
8677156 |
agggtgacatataaatgagccatcaatctgaggagcttcgatcaaattcatttttgatttaaaacttttaacaattgaatttcaatttttttggcatgat |
8677057 |
T |
|
| Q |
106 |
attgaaccctttaccatcatccttttgtcaagttcactttgacgttatttaaattcagacatgttttcccgttgaatttcttgtgtgattaggcataagt |
205 |
Q |
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| T |
8677056 |
attgaaccctttaccatcatccttttgtcaagttcactttgacgttatttaaattcagacatgttttcccgttgaatttcttgtgtgattaggcacaagt |
8676957 |
T |
|
| Q |
206 |
ttggggttcacgactgtacaaccatcaaatggatgcaatttagcatcatagcagcaagtaagcaacctatcactgcaaaacttgattaataagtggaagt |
305 |
Q |
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| T |
8676956 |
ttggggttcacgagtgtacaaccatcaaatggatgcaatttagcatcatagcagcaagtaagcaacctatcactgcaaaactttattaataagtggaagt |
8676857 |
T |
|
| Q |
306 |
ggaattttttctctcctctgagaagataattttctctcctttgtgagaagacaatcctttgctcacaaaacacacaatccgtttttcatcatagatcttt |
405 |
Q |
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| T |
8676856 |
ggaattttttctctcctctgagaagataattctctctcctttgtgagaagacaatcctttactcacaaaacacacaatccgtttttcatcatagatcttt |
8676757 |
T |
|
| Q |
406 |
ttcagaaaacaaatggtttcatggaatccttcaagtggttacatggtgatttg |
458 |
Q |
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| T |
8676756 |
ttcagaaaacaaatggtttcatggaatccttcaagtggttacatggtgatttg |
8676704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 8643123 - 8642938
Alignment:
| Q |
20 |
aatgagccatcaatctgaggagattcgatcaaattcattttgatttaaaacttttaacaattgaatttcaannnnnnnggcatgatattgaaccctttac |
119 |
Q |
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| T |
8643123 |
aatgagccatcaatttgaggagcttcgatcgaat-cattttgatttaaaacttttaccaattgaatttcgatttttttggcatgatattggaccctttac |
8643025 |
T |
|
| Q |
120 |
catcatccttttgtcaagttcactttgacgttatttaaattcagacatgttttcccgttgaatttcttgtgtgattaggcataagtt |
206 |
Q |
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| T |
8643024 |
catcatccttttgtcaagttcactttgacattatttaaattcagacatgttttcccgttgaatttcttgtgtgagtaggcacaagtt |
8642938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 8640055 - 8639928
Alignment:
| Q |
62 |
atttaaaacttttaacaattgaatttcaannnnnnnggcatgatattgaaccctttaccatcatccttttgtcaagttcactttgacgttatttaaattc |
161 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
8640055 |
atttaaaacttttaacaaatgaatttcaatttttttggcatgatagtgaaccctttaccatcatccttttgtcaagttcactttaaagttatttaaattc |
8639956 |
T |
|
| Q |
162 |
agacatgttttcccgttgaatttcttgt |
189 |
Q |
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| T |
8639955 |
agacatgtttttccattgaatttgttgt |
8639928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 8549470 - 8549512
Alignment:
| Q |
100 |
catgatattgaaccctttaccatcatccttttgtcaagttcac |
142 |
Q |
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| T |
8549470 |
catgatattgaactctttaccatcatccttttgtcaagttcac |
8549512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 8533547 - 8533501
Alignment:
| Q |
123 |
catccttttgtcaagttcactttgacgttatttaaattcagacatgttttc |
173 |
Q |
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| T |
8533547 |
catccttttgtcaagttcact----cgttatttaaattcagacatgttttc |
8533501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 8533998 - 8533941
Alignment:
| Q |
98 |
ggcatgatattgaaccctttaccatcatccttttgtcaagttcactttgacgttatttaaat |
159 |
Q |
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| T |
8533998 |
ggcatgatattgaaccctttac----atccttttgtcacgttcactttaaagttatttaaat |
8533941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 8635771 - 8635724
Alignment:
| Q |
128 |
ttttgtcaagttcactttgacgttatttaaattcagacatgttttccc |
175 |
Q |
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| T |
8635771 |
ttttgtcaagttcattttaaagttatttaaattcagaaatgttttccc |
8635724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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