View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734-Insertion-3 (Length: 827)
Name: NF1734-Insertion-3
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 722; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 10 - 747
Target Start/End: Complemental strand, 49439056 - 49438319
Alignment:
| Q |
10 |
aaacaggttgttgccactagcgtcctatccaagagatggaagcatcaatggcgctcagttttcgatatcaacttaaccaacagcatatgcaaagaatatg |
109 |
Q |
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| T |
49439056 |
aaacaggttgttgccactagcgtcctatccaagagatggaagcatcaatggcgctcagttttcgatatcaacttaaccaacagcatatgcaaagaatatg |
49438957 |
T |
|
| Q |
110 |
gagagtattacgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgcactccattctgctcaagctagattccatcaagag |
209 |
Q |
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| T |
49438956 |
gagagtattgcgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgtactccattctgctcaagctagattccatcaagag |
49438857 |
T |
|
| Q |
210 |
ttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgag |
309 |
Q |
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| T |
49438856 |
ttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgatcatgttgtacaccatggtgttgag |
49438757 |
T |
|
| Q |
310 |
agccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttggactgcaaaacccttgttgtgctcgacttgttttcatttaatg |
409 |
Q |
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| T |
49438756 |
agccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatg |
49438657 |
T |
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| Q |
410 |
cgaaggatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctgg |
509 |
Q |
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| T |
49438656 |
cgaaggatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctgg |
49438557 |
T |
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| Q |
510 |
atgtccaattcttgaagatttgcatacagaacatttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagcttaagcaagttg |
609 |
Q |
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| T |
49438556 |
atgtccaattcttgaagatttgcatacagaacatttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagcttaagcaagttg |
49438457 |
T |
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| Q |
610 |
actaaagcagaaatgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttat |
709 |
Q |
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| T |
49438456 |
actaaagcagaaatgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttat |
49438357 |
T |
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| Q |
710 |
tattgctatatgaatacactgatggtgaaatgtgttga |
747 |
Q |
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| T |
49438356 |
tattgctatatgaatacactgatggtgaaatgtgttga |
49438319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 158 - 537
Target Start/End: Complemental strand, 49435065 - 49434686
Alignment:
| Q |
158 |
gctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtgg |
257 |
Q |
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|||| |||||||||||| |||| || || ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| || || ||| |
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| T |
49435065 |
gcttcaacgagtttgtgtactctgttttgttcaagctagattccatcaagagtttctggctcaaggttggatataatggttctgatcttgcataccttgg |
49434966 |
T |
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| Q |
258 |
ctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgtt |
357 |
Q |
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| T |
49434965 |
ctttcctagcgtagttaaatggctcaaccatgttgtaaaacgcggtgttgagagaattcttctcactcttttctctggcgttgatatgaaattgcccgtt |
49434866 |
T |
|
| Q |
358 |
agcattttggactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgct |
457 |
Q |
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| T |
49434865 |
agcattttgaactgcaaaacccttgtggagctccacttgttttcatttaatgtgaaaggtttttcctctgttagacttccctccctcaaaatcctttatt |
49434766 |
T |
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| Q |
458 |
tagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctggatgtccaattcttgaagatttgcataca |
537 |
Q |
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| T |
49434765 |
tagaactttgttcgtttctaaatgctagagatttagtattgcttttggctggatgtccaattctagaagatttacataca |
49434686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 622 - 725
Target Start/End: Original strand, 49415378 - 49415481
Alignment:
| Q |
622 |
atgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatg |
721 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
49415378 |
atgccttccactttttgtcattttccattgaaagcacttcataatgtgaaggaactgtacatagaaataaatcaggtttgaaatttattattgctatatg |
49415477 |
T |
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| Q |
722 |
aata |
725 |
Q |
| |
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|||| |
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| T |
49415478 |
aata |
49415481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 49438297 - 49438232
Alignment:
| Q |
769 |
gaaaatgttgaccttatttctgatg-------gtatatatttctatgttgtttacttgtttttaga |
827 |
Q |
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| T |
49438297 |
gaaaatgttgaccttatttctgatgagtgatggtatatatttctatgttgtttacttgtttttaga |
49438232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 17637780 - 17637721
Alignment:
| Q |
471 |
atttctaaatgatcgagatttagtgttgcttctggctggatgtccaattcttgaagattt |
530 |
Q |
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| T |
17637780 |
atttctaaatgctcgagatttactgttgcttttggttggatgtcaatttcttgaagattt |
17637721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 49415223 - 49415269
Alignment:
| Q |
435 |
cccctccctcaaaatccttcgcttagaactttgttcatttctaaatg |
481 |
Q |
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| T |
49415223 |
cccctccctcaaaatccttcgtttagaacattgtatatttctaaatg |
49415269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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