View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734-Insertion-4 (Length: 875)
Name: NF1734-Insertion-4
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 8 - 875
Target Start/End: Complemental strand, 20818001 - 20817132
Alignment:
| Q |
8 |
caaactcttagaaaacgacaatgtcacttaaggactacggcgctttgaaaaagaaaacgacgacggcttgtgaatggtaaagatgtgaagaggatagtga |
107 |
Q |
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| T |
20818001 |
caaactcttaggaaacgacaatgtcacttaaggactatggcgctttgaaaaagaaaatgactacggcttgttaatggtaaagatgtgaagaggatca-ga |
20817903 |
T |
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| Q |
108 |
cactggtatgaggagcacgtcaataatgctacttatcatgaagattctgaagaaggtttaagaaacgattgtaaatttcaataaatagcaaaatgcattc |
207 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817902 |
cactggtatgaggagcacgtcgatgatgctacttatcatgaagattctgcagaaggtttaagaaacgattgtaaatttcaataaatagcaaaatgcattc |
20817803 |
T |
|
| Q |
208 |
aattttcgacattctggatatccgagtatcaagcaattgtgaaagaaaaatcaacctataaaattgatgctattaatatgattgaaattattaaattaaa |
307 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817802 |
aattttcgtcatactggatatccgagtatcaagcaattgtgaaagaaaaatcaacctataaaattgatgctattaatatgattgaaattattaaattaaa |
20817703 |
T |
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| Q |
308 |
tgctgttctataaattgagatacagtacatgaaagagaaataattgtgtgataaaagtcatatcaggttttgtgggcaatttgnnnnnnnn---cgcgtc |
404 |
Q |
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| T |
20817702 |
tgctgttctataaattgagatacagtacatgaaagagaaataattgtgtgataaaagtcatatcaggttttgtaggcaatttgaaaaaaaaaaacgcgtc |
20817603 |
T |
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| Q |
405 |
cagaaattaaggcacacgcgtccagaaattaaggcagcacagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctataga |
504 |
Q |
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| T |
20817602 |
cagaaattaaggcacacgcgtccagaaattaaggcagcacagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctataga |
20817503 |
T |
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| Q |
505 |
tcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataa |
604 |
Q |
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| T |
20817502 |
tcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataa |
20817403 |
T |
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| Q |
605 |
cccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagc |
704 |
Q |
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| T |
20817402 |
cccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagc |
20817303 |
T |
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| Q |
705 |
cacctgcatgaaatatcctgctagcattgcctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttccgattaaaccgagcc |
804 |
Q |
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| T |
20817302 |
cacctgcatgaaatatcctgctagcattgtctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagcc |
20817203 |
T |
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| Q |
805 |
atgatacgcactagctgttgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgta |
875 |
Q |
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| T |
20817202 |
atgatacgcactagctgttgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgta |
20817132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 504 - 869
Target Start/End: Original strand, 33387604 - 33387966
Alignment:
| Q |
504 |
atcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagata |
603 |
Q |
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| T |
33387604 |
atcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagata |
33387703 |
T |
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| Q |
604 |
acccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgag |
703 |
Q |
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| T |
33387704 |
acccactcgggcttggggtccaggcaatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtccgct---caagatgag |
33387800 |
T |
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| Q |
704 |
ccacctgcatgaaatatcctgctagcattgcctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttccgattaaaccgagc |
803 |
Q |
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| T |
33387801 |
ccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagc |
33387900 |
T |
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| Q |
804 |
catgatacgcactagctgttgtcgaacattatcagctgatttcaacaccctataattaataaagtt |
869 |
Q |
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| T |
33387901 |
catgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaacaaagtt |
33387966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 7e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 653 - 875
Target Start/End: Original strand, 38778276 - 38778495
Alignment:
| Q |
653 |
cctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgcctttcttatgttgacgta |
752 |
Q |
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|||| ||||||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38778276 |
cctggttgtctttaactgtcaagtagtgtcctgtccgct---caagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgta |
38778372 |
T |
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| Q |
753 |
gtagtggcgactattgaagtcagtgctgcataacttccgattaaaccgagccatgatacgcactagctgttgtcgaacattatcagctgatttcaacacc |
852 |
Q |
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| T |
38778373 |
gtagtcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgcc |
38778472 |
T |
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| Q |
853 |
ctataattaataaagttgtcgta |
875 |
Q |
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|||| ||||| ||||||||||| |
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| T |
38778473 |
ctattattaacgaagttgtcgta |
38778495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 533 - 646
Target Start/End: Original strand, 38778045 - 38778158
Alignment:
| Q |
533 |
accattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatt |
632 |
Q |
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| T |
38778045 |
accattcaccacgaatatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatt |
38778144 |
T |
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| Q |
633 |
tgatggatgcaagt |
646 |
Q |
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| T |
38778145 |
tgatggatgcaagt |
38778158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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