View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734-Insertion-5 (Length: 776)

Name: NF1734-Insertion-5
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734-Insertion-5
NF1734-Insertion-5
[»] chr1 (11 HSPs)
chr1 (8-571)||(9630675-9631240)
chr1 (642-776)||(9630467-9630603)
chr1 (636-689)||(5944365-5944418)
chr1 (634-682)||(16297223-16297271)
chr1 (398-449)||(7528130-7528181)
chr1 (635-682)||(17778623-17778670)
chr1 (635-685)||(2218298-2218348)
chr1 (654-684)||(46940748-46940778)
chr1 (634-687)||(11412704-11412757)
chr1 (635-684)||(18337399-18337448)
chr1 (654-687)||(47989597-47989630)
[»] chr3 (8 HSPs)
chr3 (256-329)||(41256784-41256857)
chr3 (635-682)||(25775577-25775624)
chr3 (634-683)||(1389907-1389956)
chr3 (635-684)||(27505321-27505370)
chr3 (635-684)||(40052382-40052431)
chr3 (634-686)||(34185050-34185102)
chr3 (655-684)||(8903525-8903554)
chr3 (635-684)||(25074865-25074914)
[»] scaffold0050 (1 HSPs)
scaffold0050 (635-681)||(70348-70394)
[»] chr6 (1 HSPs)
chr6 (635-685)||(28152168-28152218)
[»] chr2 (3 HSPs)
chr2 (634-684)||(10535685-10535735)
chr2 (635-684)||(26769592-26769641)
chr2 (635-684)||(37419824-37419873)
[»] chr5 (4 HSPs)
chr5 (635-684)||(2436981-2437030)
chr5 (636-687)||(17123119-17123169)
chr5 (635-684)||(31084398-31084447)
chr5 (635-684)||(32766872-32766921)
[»] chr7 (7 HSPs)
chr7 (654-686)||(32093952-32093984)
chr7 (636-688)||(40287298-40287350)
chr7 (641-684)||(35862027-35862070)
chr7 (634-684)||(1433528-1433578)
chr7 (654-692)||(19213882-19213920)
chr7 (635-684)||(5409771-5409820)
chr7 (635-684)||(29763129-29763178)
[»] chr4 (6 HSPs)
chr4 (636-684)||(29205539-29205587)
chr4 (635-682)||(22440559-22440606)
chr4 (654-684)||(12895214-12895244)
chr4 (634-684)||(18513175-18513225)
chr4 (635-685)||(23292925-23292975)
chr4 (635-684)||(19482749-19482798)
[»] scaffold0020 (1 HSPs)
scaffold0020 (635-686)||(135261-135312)
[»] scaffold0380 (1 HSPs)
scaffold0380 (635-684)||(8671-8720)
[»] scaffold0027 (1 HSPs)
scaffold0027 (654-687)||(46746-46779)
[»] scaffold0003 (1 HSPs)
scaffold0003 (635-696)||(241675-241736)
[»] chr8 (1 HSPs)
chr8 (635-684)||(36450694-36450743)


Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 571
Target Start/End: Complemental strand, 9631240 - 9630675
Alignment:
Q  8 gttattatctgatatattcaatgaaactgagtttggttcagaggatctcttttccattttggaaaacttcaataattttcctcccattttcaatgaccaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  9631240 gttattatctgatatattcaatgaaactgagtttggttcagaggatctcttttccattttggaaaacttcaataattttcctcccattttcattgaccat 9631141  T
Q  108 aactcaaaaacaacatcttcaagtgttcctcaagattctgaaactgagcttgctgaaacatcacaaaaatgcaagagacagaagattgtagaggaccaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9631140 aactcaaaaacaacatcttcaagtgttcctcaagattctgaaactgagcttgctgaaacatcacaaaaatgcaagagacagaagattgtagaggaacaaa 9631041  T
Q  208 acaacgatggacaacatcgtatgtcgcatatcacggtcgaacgcaatcgaagaaagcaaatgaatgagcagttatcaattttgaagtcacttatgccttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9631040 acaacgatggacaacatcgtatgtcgcatatcacggtcgaacgcaatcgaagaaagcaaatgaatgagcagttatcaattttgaagtcacttatgccttg 9630941  T
Q  308 cttttatgtcaaaagagtaagtacatattaactaacttgtcacaaattcaaattctaaataa--nnnnnnnaaagttttaaattcaattagttaggggtt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  9630940 cttttatgtcaaaagagtaagtacatattaactaacttgtcacaaattcaaattctaaataatttttttttaaagttttaaattcaattagttaggggtt 9630841  T
Q  406 tgcatgattcataaaccaaaccaagtttatggtttagttcagttgttttggtgcaatttggtttggtgcaatttaatcaaaaattttaatttttgattgg 505  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630840 tgcatgattcataaaccaaaccaaatttatggtttagttcagttgttttggtgcaatttggtttggtgcaatttaatcaaaaattttaatttttgattgg 9630741  T
Q  506 tcttctatattagagtgctatagaagcaattatgttttcttcttttaaaatctatgaagcacggat 571  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9630740 tcttctatattagagtgctatagaagcatttatgttttcttcttttaaaatctatgaagcacggat 9630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 642 - 776
Target Start/End: Complemental strand, 9630603 - 9630467
Alignment:
Q  642 acacgaggatatgcctaatccgaggagtgttcgtgcttcatagtttaaaattaatttttt--gtatgaaaaatgcaactaattactctcctatatggttt 739  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9630603 acacgaggacacgcctaatccgaggagtgttcgtgcttcatagtttaaaattaattttttttgtatgaaaaatgcaactaattactctcctatatggttt 9630504  T
Q  740 agggagatcaagcatcaatagttgaaagtgtaattga 776  Q
    |||||||||||||||||||||||||||||||||||||    
T  9630503 agggagatcaagcatcaatagttgaaagtgtaattga 9630467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 636 - 689
Target Start/End: Original strand, 5944365 - 5944418
Alignment:
Q  636 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtttaa 689  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||    
T  5944365 tgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatagattaa 5944418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 682
Target Start/End: Complemental strand, 16297271 - 16297223
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 682  Q
    |||||||||||| |||| | |||||||||||||||||| ||||||||||    
T  16297271 tgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 7528130 - 7528181
Alignment:
Q  398 taggggtttgcatgattcataaaccaaaccaagtttatggtttagttcagtt 449  Q
    ||||||| |||||||||||| |||||||||||  | ||||||||||||||||    
T  7528130 taggggtgtgcatgattcatgaaccaaaccaaactgatggtttagttcagtt 7528181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 682
Target Start/End: Original strand, 17778623 - 17778670
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 682  Q
    |||||||||||  ||| |||||||||||||| ||||||||||||||||    
T  17778623 gtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 685
Target Start/End: Original strand, 2218298 - 2218348
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagt 685  Q
    ||||||||||| |||| | |||||||| ||||||||| |||||||||||||    
T  2218298 gtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatagt 2218348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 684
Target Start/End: Complemental strand, 46940778 - 46940748
Alignment:
Q  654 gcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||||||||||||||||||||||    
T  46940778 gcctaatccgaggagtgttcgtgcttcatag 46940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 687
Target Start/End: Complemental strand, 11412757 - 11412704
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttt 687  Q
    |||||||||||| |||| |||||| |||| |||||||| |||||||||| ||||    
T  11412757 tgtgtccgacactaggacatgccttatcctaggagtgtccgtgcttcatggttt 11412704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 18337399 - 18337448
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| |||||| ||||||||||||| ||||||||||||    
T  18337399 gtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 687
Target Start/End: Original strand, 47989597 - 47989630
Alignment:
Q  654 gcctaatccgaggagtgttcgtgcttcatagttt 687  Q
    |||||||||||||||||| |||||||||||||||    
T  47989597 gcctaatccgaggagtgtccgtgcttcatagttt 47989630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 41256784 - 41256857
Alignment:
Q  256 gaagaaagcaaatgaatgagcagttatcaattttgaagtcacttatgccttgcttttatgtcaaaagagtaagt 329  Q
    |||||||||||||||||||||| || ||  |||| | |||||||||||||||||||||||||||||| ||||||    
T  41256784 gaagaaagcaaatgaatgagcatttgtctgttttaaggtcacttatgccttgcttttatgtcaaaagggtaagt 41256857  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 635 - 682
Target Start/End: Original strand, 25775577 - 25775624
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 682  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||    
T  25775577 gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 683
Target Start/End: Original strand, 1389907 - 1389956
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcata 683  Q
    |||||||||||| |||| ||||||||||| |||||||| |||||||||||    
T  1389907 tgtgtccgacaccaggacatgcctaatccaaggagtgtccgtgcttcata 1389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 27505321 - 27505370
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  27505321 gtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 40052382 - 40052431
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| | |||||||||||||||||||||||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 686
Target Start/End: Complemental strand, 34185102 - 34185050
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtt 686  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||||||||||||    
T  34185102 tgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagtt 34185050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 684
Target Start/End: Original strand, 8903525 - 8903554
Alignment:
Q  655 cctaatccgaggagtgttcgtgcttcatag 684  Q
    ||||||||||||||||||||||||||||||    
T  8903525 cctaatccgaggagtgttcgtgcttcatag 8903554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 25074865 - 25074914
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| |  ||||||||||||||||||||||||||||||    
T  25074865 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 681
Target Start/End: Original strand, 70348 - 70394
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttca 681  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  70348 gtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 685
Target Start/End: Original strand, 28152168 - 28152218
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagt 685  Q
    |||||||||||  ||| | ||||||||||||||||||||||||||||||||    
T  28152168 gtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatagt 28152218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 684
Target Start/End: Complemental strand, 10535735 - 10535685
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  10535735 tgtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 26769592 - 26769641
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  26769592 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 37419824 - 37419873
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 2436981 - 2437030
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    ||||||||||| | || | |||||||||||||||||||||||||||||||    
T  2436981 gtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 687
Target Start/End: Original strand, 17123119 - 17123169
Alignment:
Q  636 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttt 687  Q
    ||||||||||| ||| | |||||||||||||||||| |||||||||||||||    
T  17123119 tgtccgacacg-ggacacgcctaatccgaggagtgtccgtgcttcatagttt 17123169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 31084398 - 31084447
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| |||||||||||||||||||| |||| |||||||    
T  31084398 gtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcatag 31084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 32766921 - 32766872
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    ||||||||||| |||||| | |||||| ||||||||| ||||||||||||    
T  32766921 gtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 686
Target Start/End: Complemental strand, 32093984 - 32093952
Alignment:
Q  654 gcctaatccgaggagtgttcgtgcttcatagtt 686  Q
    |||||||||||||||||||||||||||||||||    
T  32093984 gcctaatccgaggagtgttcgtgcttcatagtt 32093952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 688
Target Start/End: Complemental strand, 40287350 - 40287298
Alignment:
Q  636 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagttta 688  Q
    ||||||||||  ||| |||||||||||||||||||| |||||||| |||||||    
T  40287350 tgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcgtagttta 40287298  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 684
Target Start/End: Original strand, 35862027 - 35862070
Alignment:
Q  641 gacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||| | |||||||||||||||||| ||||||||||||    
T  35862027 gacacgaggacacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 684
Target Start/End: Original strand, 1433528 - 1433578
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||| |||| | | |||||||||||||||| ||||||||||||    
T  1433528 tgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 692
Target Start/End: Original strand, 19213882 - 19213920
Alignment:
Q  654 gcctaatccgaggagtgttcgtgcttcatagtttaaaat 692  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  19213882 gcctaatccgaggagtgtccgtgcttcatagttcaaaat 19213920  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 5409820 - 5409771
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| | |||||||||||||||||| ||||||||||||    
T  5409820 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 29763178 - 29763129
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    ||||||||||  |||| | |||||||||||||||||| ||||||||||||    
T  29763178 gtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 684
Target Start/End: Original strand, 29205539 - 29205587
Alignment:
Q  636 tgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    ||||||||||  ||| | |||||||||||||||||||||||||||||||    
T  29205539 tgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 682
Target Start/End: Complemental strand, 22440606 - 22440559
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcat 682  Q
    ||||||||||| |||| | |||||||||||||||||| ||||||||||    
T  22440606 gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 684
Target Start/End: Complemental strand, 12895244 - 12895214
Alignment:
Q  654 gcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||||||||||||||||||||||    
T  12895244 gcctaatccgaggagtgttcgtgcttcatag 12895214  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 684
Target Start/End: Complemental strand, 18513225 - 18513175
Alignment:
Q  634 tgtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||| |||| | |||||||| ||||||||| ||||||||||||    
T  18513225 tgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 685
Target Start/End: Complemental strand, 23292975 - 23292925
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagt 685  Q
    |||||||||||  ||| | |||||||||||||||||| |||||||||||||    
T  23292975 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagt 23292925  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 19482749 - 19482798
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||| |  ||||||||||||||||||||||||||||||    
T  19482749 gtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 686
Target Start/End: Complemental strand, 135312 - 135261
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtt 686  Q
    ||||||||||| |||| | |||||||| |||| |||||||||||||||||||    
T  135312 gtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatagtt 135261  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 8671 - 8720
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    |||||||||||  ||||| ||||||||| |||||||| ||||||||||||    
T  8671 gtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 687
Target Start/End: Original strand, 46746 - 46779
Alignment:
Q  654 gcctaatccgaggagtgttcgtgcttcatagttt 687  Q
    |||||||||||||||||| |||||||||||||||    
T  46746 gcctaatccgaggagtgtccgtgcttcatagttt 46779  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 696
Target Start/End: Original strand, 241675 - 241736
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatagtttaaaattaat 696  Q
    |||||||||||  ||| | |||||||||||| ||||| |||||||||||| ||| |||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagattacaattaat 241736  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 36450743 - 36450694
Alignment:
Q  635 gtgtccgacacgaggatatgcctaatccgaggagtgttcgtgcttcatag 684  Q
    ||||||||||| |||| | ||||||||||||||||||  |||||||||||    
T  36450743 gtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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