View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17340_high_5 (Length: 333)
Name: NF17340_high_5
Description: NF17340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17340_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 46274360 - 46274044
Alignment:
| Q |
1 |
taccaaatcatggtattgacaggaaccatcgagattgtcgtcgtcggagaacatagcattgcaaccaatcctttgacatcgaactttaacaactgtgttc |
100 |
Q |
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| T |
46274360 |
taccaaatcatggtattgacaggaaccatcgagattgtcgtcgtcggagaacatagcattgcaaccaatcctttgacatcgaactttaacaactgtgttc |
46274261 |
T |
|
| Q |
101 |
tccattcttgaaaactaacacgatccctaactacaagactcaagaagaagaagaagattagagttttctatcttgtgggattttatattctttataaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46274260 |
tccattcttgaaaactaacacgatccctaactacaagactcaagaagaagaagaagattagagttttctatcttgtgggattttatattctttataaaca |
46274161 |
T |
|
| Q |
201 |
cgcaaaactcacacaagtttcaacggtttgggtttcggagattcctcacagtttctagtacacttcgaaggttctagagtttgagtaaaggttaggttcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46274160 |
cgcaaaactcacacaagtttcaacggtttgggtttcggagattcctcacagtttctagtacacttcgaaggttctagagtttgagtaaaggttaggtttg |
46274061 |
T |
|
| Q |
301 |
gcattcaccccttgttt |
317 |
Q |
| |
|
||||||||||||||||| |
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| T |
46274060 |
gcattcaccccttgttt |
46274044 |
T |
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