View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17340_high_6 (Length: 304)
Name: NF17340_high_6
Description: NF17340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17340_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 35285064 - 35285339
Alignment:
| Q |
18 |
acaagaaaggaagttgaagaagaagtccatttttctttgtttggaatccaaaaaattagtagtggagtcgttaagttgaaccttcttatttaggtacaac |
117 |
Q |
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| T |
35285064 |
acaagaaaggaagttgaagaagaagtccatttttctttgtttggaatccaaaaaattagtagtggagtcgttgagttgaaccttcttatttaggtacaac |
35285163 |
T |
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| Q |
118 |
aacgctttgcgagcctctttggtgtttcggttcctacctctccaaaaccttgtggccggtcacttaccaattactgttccccaatagccacgttacacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35285164 |
aacgctttgcgagcctctttggtgtttcggttcctacctctccaaaaccttgtggccggtcacttaccaattactgttccccaatagccacgttacacat |
35285263 |
T |
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| Q |
218 |
tagtatcatatcaatttttgtttaagatatcacatacgaaagttagagactaattattcgagatacatagattcat |
293 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
35285264 |
tagtatcatatcaatttttgtttaagatatcacaaacgaaagttagagactaattattcgagatagagagattcat |
35285339 |
T |
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