View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17340_low_4 (Length: 345)
Name: NF17340_low_4
Description: NF17340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17340_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 41301604 - 41301466
Alignment:
| Q |
1 |
taggatgcttaactaccatagaattgactcttttaaatggatgggaaatgcctttaaactagttgtttctattcttccccgttatagcaattattgaaag |
100 |
Q |
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| T |
41301604 |
taggatgcttaactactatagaattgactcttttaaatggatgggaaatacctttaaacaagttgtttctattcttccccgttatagcaattattgaaag |
41301505 |
T |
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| Q |
101 |
ttgtttcaacataaaaagagagacaatatcatttgagtg |
139 |
Q |
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| T |
41301504 |
ttgtttcaacataaaaagagaaacaatatcatttgagtg |
41301466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 41301420 - 41301325
Alignment:
| Q |
187 |
attaaagttaaaagcaaatcatggtatacaatatatcaaactaccatgcttaaataaattaaataacgagtaaaactaataagagcaaaagtgcac |
282 |
Q |
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| T |
41301420 |
attaaagttaacaacaaatcatggtatacaatatatcaaactaccatgcttaaataaattaaataacgagtaaaactaataagagcaaaaatgcac |
41301325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 41301300 - 41301255
Alignment:
| Q |
300 |
tgtagcaatacatacacgaggcaatgaagggctgttgataaacctt |
345 |
Q |
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| T |
41301300 |
tgtagcaatacatacacgaggcaatgaagggctgttgataaacctt |
41301255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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