View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17340_low_6 (Length: 322)
Name: NF17340_low_6
Description: NF17340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17340_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 983257 - 982970
Alignment:
| Q |
16 |
cataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983257 |
cataggaaatttgaatgcatgaccaagacacaagatactttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccacata |
983158 |
T |
|
| Q |
116 |
aaatacctatatactttattttgtagcaaatgtttaaattgtactatattttttcttgtacaaacttgtactatataattaatttaccatagcagttcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
983157 |
aaatacctatatactttattttgtagcaaatgtttaaactgtactatattttttcttgtacaaacttgtactatattattaatttaccatagcagttcag |
983058 |
T |
|
| Q |
216 |
ttcacgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctca |
303 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983057 |
ttcatgcacgcataaactcattaatttaccataccaattcagttcacacatgtataaactcattaatgtacaatatagaacaatctca |
982970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 40413331 - 40413224
Alignment:
| Q |
14 |
agcataggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaagacccttaaaatatcttctaccatttacatcatcaactgtttgccaca |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
40413331 |
agcaaaggaaatttgaatgcatgaccaagacacaagatgctttaaaaagaaataccctcgaaatatcttctaccatttacatcatcaactgtttgacata |
40413232 |
T |
|
| Q |
114 |
taaaatac |
121 |
Q |
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|| ||||| |
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| T |
40413231 |
tacaatac |
40413224 |
T |
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