View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17340_low_9 (Length: 278)
Name: NF17340_low_9
Description: NF17340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17340_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 24404348 - 24404624
Alignment:
| Q |
1 |
ccaaaaacctttatggagtttcttgttaccgatctccccactccaacattcaaagtgctcgaagaagctttgggaagtaatgaagttaatctcaagccac |
100 |
Q |
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| T |
24404348 |
ccaaaaacctttatggagtttcttgttacggatctccccactccaacattcaaagtgctcgaacaggctttgggaagtaatgaagttaatctcaagccac |
24404447 |
T |
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| Q |
101 |
ccgaaaatcgctgaccacatccttcaccgtccgtgatgtttcataaacgaagcattatttacatttacttcatgatcccttttcccccatttgttttaga |
200 |
Q |
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| T |
24404448 |
cccaaaatcgctgaccacatccttcaccgtccttgatgtttcataaacgaagcattatttacatttacttca-gatcccttttcccccatttgttttaga |
24404546 |
T |
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| Q |
201 |
tatatgattaattgtttgcatgggacattaacacacatactcacataaccatgtccaacaatttctccaataaattta |
278 |
Q |
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| T |
24404547 |
tatatgattaattgtttgcatgcgacattaacacacatactcacataaccaggtccaacaatttctccaataaattta |
24404624 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 35846568 - 35846659
Alignment:
| Q |
1 |
ccaaaaacctttatggagtttcttgttaccgatctccccactccaaca-ttcaaagtgctcgaagaagctttgggaagtaatgaagttaatc |
91 |
Q |
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|||||||||| || | ||||||||||| | ||| |||||||||||| | ||||||||||||||| || | ||||| ||||||||||||||| |
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| T |
35846568 |
ccaaaaacctgtacgaagtttcttgtttcggatttccccactccaaaaattcaaagtgctcgaacaaacgttggggtgtaatgaagttaatc |
35846659 |
T |
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