View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17341_low_1 (Length: 495)

Name: NF17341_low_1
Description: NF17341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17341_low_1
NF17341_low_1
[»] chr4 (37 HSPs)
chr4 (8-477)||(48822649-48823120)
chr4 (246-291)||(39807924-39807969)
chr4 (243-287)||(28798395-28798439)
chr4 (244-287)||(23417490-23417533)
chr4 (237-287)||(12735502-12735552)
chr4 (246-287)||(238465-238506)
chr4 (246-287)||(1174031-1174072)
chr4 (246-287)||(1966630-1966671)
chr4 (246-287)||(26424865-26424906)
chr4 (246-287)||(34739360-34739401)
chr4 (246-287)||(43139913-43139954)
chr4 (246-287)||(45874135-45874176)
chr4 (250-291)||(52171993-52172034)
chr4 (246-287)||(53457904-53457945)
chr4 (239-287)||(12867914-12867962)
chr4 (246-285)||(23532127-23532166)
chr4 (244-287)||(50347336-50347379)
chr4 (238-281)||(52768313-52768356)
chr4 (253-291)||(19673932-19673970)
chr4 (246-284)||(37134128-37134166)
chr4 (253-287)||(37620704-37620738)
chr4 (246-287)||(18257409-18257450)
chr4 (254-287)||(23710340-23710373)
chr4 (246-287)||(29581051-29581091)
chr4 (246-287)||(31015062-31015103)
chr4 (255-291)||(2804609-2804645)
chr4 (248-287)||(33770650-33770689)
chr4 (248-287)||(55400310-55400349)
chr4 (253-287)||(19814192-19814226)
chr4 (246-280)||(44369929-44369963)
chr4 (237-287)||(54768439-54768489)
chr4 (246-284)||(55214732-55214770)
chr4 (246-287)||(19849510-19849551)
chr4 (246-287)||(22608065-22608106)
chr4 (246-291)||(41679454-41679499)
chr4 (246-287)||(50033462-50033503)
chr4 (255-287)||(11278067-11278099)
[»] chr7 (40 HSPs)
chr7 (239-287)||(11355896-11355944)
chr7 (246-291)||(5772822-5772867)
chr7 (239-287)||(47570725-47570773)
chr7 (246-284)||(34763522-34763560)
chr7 (246-287)||(4106818-4106859)
chr7 (246-287)||(4107389-4107430)
chr7 (246-287)||(19630675-19630716)
chr7 (246-287)||(23358265-23358306)
chr7 (234-291)||(25049961-25050018)
chr7 (246-287)||(25546282-25546323)
chr7 (246-287)||(31770539-31770580)
chr7 (246-287)||(38781215-38781256)
chr7 (246-287)||(44084020-44084061)
chr7 (243-287)||(39513990-39514034)
chr7 (248-287)||(47250258-47250297)
chr7 (237-287)||(8439149-8439199)
chr7 (246-287)||(27229484-27229526)
chr7 (241-287)||(31288231-31288277)
chr7 (246-287)||(2146716-2146757)
chr7 (246-287)||(15634886-15634927)
chr7 (246-287)||(25112254-25112295)
chr7 (246-287)||(38033809-38033850)
chr7 (246-287)||(40058318-40058359)
chr7 (246-287)||(47557861-47557902)
chr7 (246-287)||(48444159-48444200)
chr7 (240-287)||(5462957-5463004)
chr7 (240-287)||(27915587-27915634)
chr7 (253-287)||(7162797-7162831)
chr7 (246-287)||(43753760-43753802)
chr7 (254-287)||(5587368-5587401)
chr7 (254-287)||(5592329-5592362)
chr7 (250-287)||(28603095-28603132)
chr7 (250-287)||(29484762-29484799)
chr7 (246-287)||(41183895-41183936)
chr7 (246-287)||(48146833-48146874)
chr7 (251-287)||(18506283-18506319)
chr7 (255-287)||(23036212-23036244)
chr7 (239-287)||(35309927-35309975)
chr7 (247-287)||(43170946-43170986)
chr7 (243-287)||(43203383-43203427)
[»] chr1 (33 HSPs)
chr1 (84-153)||(32149561-32149631)
chr1 (246-287)||(13109850-13109891)
chr1 (239-287)||(48660095-48660143)
chr1 (237-287)||(35110106-35110156)
chr1 (237-287)||(41761418-41761468)
chr1 (246-287)||(5055795-5055836)
chr1 (246-287)||(28455954-28455995)
chr1 (246-287)||(32007154-32007195)
chr1 (246-299)||(35945877-35945930)
chr1 (246-291)||(39276430-39276475)
chr1 (246-287)||(41039310-41039351)
chr1 (246-287)||(41808282-41808323)
chr1 (246-287)||(45813018-45813059)
chr1 (243-287)||(13183183-13183227)
chr1 (248-287)||(11688345-11688384)
chr1 (237-287)||(192486-192536)
chr1 (246-284)||(7059547-7059585)
chr1 (246-287)||(20828-20869)
chr1 (246-287)||(778654-778695)
chr1 (234-287)||(5943749-5943802)
chr1 (246-287)||(7275761-7275802)
chr1 (246-287)||(26032881-26032922)
chr1 (250-287)||(29994390-29994427)
chr1 (246-291)||(34305655-34305700)
chr1 (243-287)||(4066038-4066082)
chr1 (237-287)||(21939013-21939063)
chr1 (250-287)||(2088912-2088949)
chr1 (246-287)||(13097384-13097425)
chr1 (250-287)||(25931164-25931201)
chr1 (246-287)||(26264543-26264584)
chr1 (246-287)||(32982357-32982398)
chr1 (234-283)||(39112002-39112050)
chr1 (246-287)||(49783787-49783828)
[»] chr8 (33 HSPs)
chr8 (246-287)||(31532132-31532173)
chr8 (239-287)||(28817329-28817377)
chr8 (239-287)||(42192646-42192694)
chr8 (239-287)||(42885247-42885295)
chr8 (246-287)||(1347-1388)
chr8 (246-287)||(70530-70571)
chr8 (246-287)||(1078655-1078696)
chr8 (246-287)||(6602525-6602566)
chr8 (246-287)||(6677978-6678019)
chr8 (246-287)||(7813402-7813443)
chr8 (246-287)||(9292098-9292139)
chr8 (250-287)||(29425435-29425472)
chr8 (246-287)||(32333194-32333235)
chr8 (246-287)||(35779504-35779545)
chr8 (237-285)||(3822467-3822515)
chr8 (246-290)||(5385418-5385462)
chr8 (239-287)||(7792734-7792782)
chr8 (251-299)||(40911305-40911353)
chr8 (246-285)||(45264649-45264688)
chr8 (246-287)||(39303389-39303431)
chr8 (246-287)||(4530989-4531030)
chr8 (246-287)||(13891170-13891211)
chr8 (243-291)||(18752418-18752466)
chr8 (240-287)||(20269604-20269651)
chr8 (240-287)||(21056233-21056280)
chr8 (248-287)||(31969727-31969766)
chr8 (253-287)||(10963249-10963283)
chr8 (247-285)||(33731473-33731511)
chr8 (241-287)||(40932784-40932830)
chr8 (249-299)||(41849227-41849276)
chr8 (246-284)||(42364712-42364750)
chr8 (250-287)||(31695276-31695313)
chr8 (246-287)||(39435362-39435403)
[»] chr6 (17 HSPs)
chr6 (246-291)||(33704296-33704341)
chr6 (246-287)||(4464207-4464248)
chr6 (241-286)||(10999416-10999461)
chr6 (246-287)||(33621574-33621615)
chr6 (246-287)||(35218647-35218688)
chr6 (246-287)||(2959229-2959270)
chr6 (246-291)||(9454728-9454773)
chr6 (250-287)||(19145554-19145591)
chr6 (246-287)||(21037370-21037411)
chr6 (250-287)||(24619086-24619123)
chr6 (248-291)||(12252105-12252148)
chr6 (246-287)||(361091-361132)
chr6 (250-287)||(21000776-21000813)
chr6 (250-287)||(28323016-28323053)
chr6 (246-287)||(29009657-29009698)
chr6 (255-287)||(7014317-7014349)
chr6 (239-291)||(32295141-32295193)
[»] chr5 (21 HSPs)
chr5 (243-287)||(23262621-23262665)
chr5 (246-291)||(19181791-19181835)
chr5 (246-287)||(21018303-21018344)
chr5 (246-287)||(29265955-29265996)
chr5 (246-287)||(31909392-31909433)
chr5 (246-287)||(32143421-32143462)
chr5 (246-287)||(35317704-35317745)
chr5 (249-287)||(40177707-40177745)
chr5 (246-287)||(2971064-2971105)
chr5 (248-285)||(3386902-3386939)
chr5 (246-287)||(4824946-4824987)
chr5 (247-284)||(6021073-6021110)
chr5 (250-287)||(12257440-12257477)
chr5 (246-287)||(13204037-13204078)
chr5 (246-285)||(27721511-27721550)
chr5 (250-287)||(1191547-1191584)
chr5 (246-287)||(2786351-2786391)
chr5 (246-287)||(17984749-17984790)
chr5 (246-287)||(28591357-28591398)
chr5 (259-287)||(17465170-17465198)
chr5 (241-281)||(29674492-29674532)
[»] chr3 (26 HSPs)
chr3 (239-287)||(3113002-3113050)
chr3 (243-287)||(51665932-51665976)
chr3 (246-287)||(7824461-7824502)
chr3 (246-287)||(9349683-9349724)
chr3 (246-287)||(29689489-29689530)
chr3 (246-287)||(43247657-43247698)
chr3 (246-287)||(54158346-54158387)
chr3 (246-287)||(55018041-55018082)
chr3 (248-287)||(55320407-55320446)
chr3 (241-287)||(43775298-43775344)
chr3 (246-287)||(4601505-4601546)
chr3 (246-287)||(27230746-27230787)
chr3 (246-287)||(33334688-33334729)
chr3 (246-287)||(36229001-36229042)
chr3 (250-287)||(38257310-38257347)
chr3 (250-287)||(42392812-42392849)
chr3 (246-287)||(52500918-52500959)
chr3 (246-287)||(54151688-54151729)
chr3 (246-285)||(448884-448923)
chr3 (240-287)||(32001431-32001478)
chr3 (257-287)||(2590817-2590847)
chr3 (246-287)||(28844584-28844626)
chr3 (246-287)||(475288-475328)
chr3 (246-299)||(7958649-7958702)
chr3 (246-287)||(40756734-40756775)
chr3 (247-287)||(47635012-47635052)
[»] chr2 (23 HSPs)
chr2 (237-299)||(11708749-11708811)
chr2 (213-287)||(42578215-42578289)
chr2 (246-287)||(4851400-4851441)
chr2 (246-287)||(10639613-10639654)
chr2 (246-287)||(23839939-23839980)
chr2 (246-287)||(29659225-29659266)
chr2 (246-287)||(33083561-33083602)
chr2 (246-287)||(34460449-34460490)
chr2 (246-287)||(37197617-37197658)
chr2 (246-287)||(45125172-45125213)
chr2 (243-287)||(27137925-27137969)
chr2 (246-287)||(19537387-19537428)
chr2 (246-287)||(26605704-26605745)
chr2 (234-291)||(34239823-34239880)
chr2 (250-287)||(39831451-39831488)
chr2 (246-287)||(43778475-43778516)
chr2 (239-284)||(44181897-44181942)
chr2 (246-287)||(11816557-11816599)
chr2 (237-287)||(33001773-33001823)
chr2 (253-287)||(38440204-38440238)
chr2 (246-287)||(11459795-11459836)
chr2 (250-287)||(19048838-19048875)
chr2 (251-287)||(15782674-15782710)
[»] scaffold1348 (1 HSPs)
scaffold1348 (246-287)||(869-910)
[»] scaffold0119 (2 HSPs)
scaffold0119 (246-287)||(13958-13999)
scaffold0119 (246-287)||(19638-19679)
[»] scaffold0053 (1 HSPs)
scaffold0053 (246-287)||(22243-22284)
[»] scaffold0032 (1 HSPs)
scaffold0032 (246-287)||(56561-56602)
[»] scaffold0044 (1 HSPs)
scaffold0044 (248-287)||(9980-10019)
[»] scaffold0360 (1 HSPs)
scaffold0360 (251-284)||(14590-14623)
[»] scaffold0352 (1 HSPs)
scaffold0352 (246-287)||(8950-8991)
[»] scaffold0178 (1 HSPs)
scaffold0178 (239-291)||(15137-15189)
[»] scaffold0067 (1 HSPs)
scaffold0067 (247-287)||(34899-34940)
[»] scaffold0038 (1 HSPs)
scaffold0038 (250-287)||(114336-114373)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 48822649 - 48823120
Alignment:
Q  8 agattattctacaaacactcttttgtataagctccaacaaatgtcattctacaatagaagtgtctacaatacaataaacaatttggtttaagattttatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  48822649 agattattctacaaacactcttttgtataagctccaacaaatgtcattctacaatagaagttcctacaataaaataaacaatttggtttaagattttatt 48822748  T
Q  108 tctaatccataatataaaaaccatttattaaaagatatcaacccttgtac------cnnnnnnnnnnngatatcaacctttgtctagaagtcctagctca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||| || ||||||| |||||||||||||||    
T  48822749 tctaatccataatataaaaaccatttattaaaagatatcaacccttgtacaaaaaaaaaaaaaaaaaagatattaatctttgtccagaagtcctagctca 48822848  T
Q  202 actgataggatattgcaaagtcggatgtcacgactcaggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaatatcaaaaga 301  Q
    ||||| ||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||    
T  48822849 actgacaggatattgcaaagtggaatgttacgacccagaatctcacagttgtgtgtgagtttaatttcaatagattaccacttcatttaagatcaaaaga 48822948  T
Q  302 gaaaggnnnnnnnntaagatatcaaccctttaattagatttcaattatttcaagagattacgtggagaaacttataccaaaaataatggttagcaacact 401  Q
    |||||          || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  48822949 gaaag----aaaaaaaaaatatcaaccctttaattagatttcaattatttcaagagattacgtggagatacttatcccaaaaataatggttagcaacact 48823044  T
Q  402 ttcagcaagatcacgcggtctttcctacnnnnnnnnnnnnccaagatcacgtggtttcgatctaaatgaatatgat 477  Q
    ||||||||||||| | ||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  48823045 ttcagcaagatcatgtggtctttcctacaaaaaagaaaaaccaagatcacgtggtttcgatctaaatgaatatgat 48823120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 39807924 - 39807969
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  39807924 acagttgtgtgtgagtttaatttcagtggattaccacttcctttaa 39807969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 28798439 - 28798395
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  28798439 cttacagttgtgtgtgagtttattttcagtggattaccacttcat 28798395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 23417533 - 23417490
Alignment:
Q  244 ttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  23417533 ttacagttgtgtgtgagtttattttcagtggattaccacttcat 23417490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 12735502 - 12735552
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  12735502 caggacctcacagttgtgtgtgagtttattttcagtggattaccacttcat 12735552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 238506 - 238465
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  238506 acagttgtgtgtgagtttattttcagtggattaccacttcat 238465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 1174031 - 1174072
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  1174031 acagttgtgtgtgagtttattttcagtggattaccacttcat 1174072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 1966630 - 1966671
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  1966630 acagttgtgtgtgagtttaatttcagtggattacaacttcat 1966671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 26424906 - 26424865
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  26424906 acagttgtgtgtgagtttattttcagtggattaccacttcat 26424865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 34739360 - 34739401
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  34739360 acagttgtgtgtgagtttattttcagtggattaccacttcat 34739401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 43139954 - 43139913
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  43139954 acagttgtgtgtgagtttattttcagtggattaccacttcat 43139913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 45874135 - 45874176
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  45874135 acagttgtgtgtgagtttattttcagtggattaccacttcat 45874176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 52172034 - 52171993
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  52172034 ttgtgtgtgagtttaatttcagtggattaccactttatttaa 52171993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 53457904 - 53457945
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  53457904 acagttgtgtgtgagtttattttcagtggattaccacttcat 53457945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 12867914 - 12867962
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  12867914 ggatctcacagttgtgagtgagtttattttcagtggattaccacttcat 12867962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 23532127 - 23532166
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  23532127 acagttgtgtgtgagtttaatttcagtgaattaccacttc 23532166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 50347379 - 50347336
Alignment:
Q  244 ttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  50347379 ttacagatgtgtgtgagtttaatttcagtggattaccacctcat 50347336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 52768356 - 52768313
Alignment:
Q  238 aggatcttacagttgtgtgtgagtttaatttcagtggattacca 281  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||    
T  52768356 aggatctcacagttgtgtgtgagtttaatttcaatggattacca 52768313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 19673970 - 19673932
Alignment:
Q  253 tgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  19673970 tgtgcgagtttaatttcagtggattaccacttcatttaa 19673932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 37134128 - 37134166
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  37134128 acagttgtgtgtgagtttaatttcagtggtttaccactt 37134166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 37620704 - 37620738
Alignment:
Q  253 tgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||||||||||||||    
T  37620704 tgtgtgagtttaatttcagtggattaccacttcat 37620738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 18257409 - 18257450
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  18257409 acagttgtgcgtgagtttattttcagtggattaccacttcat 18257450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 23710373 - 23710340
Alignment:
Q  254 gtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||||||||    
T  23710373 gtgtgagtttaatttcagtggattaccacttcat 23710340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 29581091 - 29581051
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  29581091 acagttgtgtgtgagtttaattt-agtggattaccacttcat 29581051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 31015062 - 31015103
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  31015062 acagttgtgtgtgagtttaatttcagtgctttaccacttcat 31015103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 2804609 - 2804645
Alignment:
Q  255 tgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2804609 tgtgagtttaatttaagtggattaccacttcatttaa 2804645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 33770650 - 33770689
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  33770650 agttgtgtgtgagtttaatttcagtggtttaccgcttcat 33770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 55400310 - 55400349
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  55400310 agttgtatgtgagtttattttcagtggattaccacttcat 55400349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 19814192 - 19814226
Alignment:
Q  253 tgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||| ||||||||||||||    
T  19814192 tgtgtgagtttaatttcagttgattaccacttcat 19814226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 44369963 - 44369929
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattacc 280  Q
    ||||||||||||||||||||||||||||| |||||    
T  44369963 acagttgtgtgtgagtttaatttcagtggtttacc 44369929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 54768489 - 54768439
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || ||||||||||| ||||||  ||||||||||||||||||||||    
T  54768489 caggacctcacagttgtgtgcgagttttttttcagtggattaccacttcat 54768439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 55214732 - 55214770
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  55214732 acagttgtgtatgagtttattttcagtggattaccactt 55214770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 19849551 - 19849510
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||    
T  19849551 acagttgtgtgtgagtttattttcaatggtttaccacttcat 19849510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 22608065 - 22608106
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| |||||||||||||| |||||||| |||||||    
T  22608065 acagttgtgtctgagtttaatttcaatggattactacttcat 22608106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 41679454 - 41679499
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||||||||||||| |||||||||||  ||||||||| ||||||    
T  41679454 acagttgtgtgtgagtgtaatttcagtgacttaccactttatttaa 41679499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 50033462 - 50033503
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||| |||||||||||| || |||||||||||||    
T  50033462 acagttgtgtgtaagtttaatttcaatgaattaccacttcat 50033503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 11278067 - 11278099
Alignment:
Q  255 tgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||| ||||||||||||    
T  11278067 tgtgagtttaatttcagtggtttaccacttcat 11278099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 11355896 - 11355944
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11355896 ggatctcacagttgtgtgtgagtttaatttcagtggattaccacttcat 11355944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 5772867 - 5772822
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  5772867 acagttgtgtgtgagtttaatttcagtggtttaccacttcatttaa 5772822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 47570773 - 47570725
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  47570773 ggatctcacagttgtgtgtgagtttattttcagtggattaccacttcat 47570725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 34763522 - 34763560
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34763522 acagttgtgtgtgagtttaatttcagtggattaccactt 34763560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 4106818 - 4106859
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  4106818 acagttgtgtgtgagtttattttcagtggattaccacttcat 4106859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 4107389 - 4107430
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  4107389 acagttgtgtgtgagtttattttcagtggattaccacttcat 4107430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 19630716 - 19630675
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19630716 acagttgtgtgtgagtttattttcagtggattaccacttcat 19630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 23358265 - 23358306
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  23358265 acagttgtgtgtgagtttattttcagtggattaccacttcat 23358306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 25050018 - 25049961
Alignment:
Q  234 actcaggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    ||||| ||||| |||||||| |||||||||||||| |||||||||||| |||||||||    
T  25050018 actcatgatctcacagttgtatgtgagtttaatttaagtggattaccatttcatttaa 25049961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 25546323 - 25546282
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  25546323 acagttgtgtgtgagtttaatttcagtggtttaccacttcat 25546282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 31770580 - 31770539
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  31770580 acagttgtgtgtgagtttattttcagtggattaccacttcat 31770539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 38781256 - 38781215
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38781256 acagttgtgtgtgagtttattttcagtggattaccacttcat 38781215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 44084020 - 44084061
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  44084020 acagttgtgtgtgagtttattttcagtggattaccacttcat 44084061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 39514034 - 39513990
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||    
T  39514034 cttacagttatgtgtgagtttaatttcggtggattaccacttcat 39513990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 47250297 - 47250258
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  47250297 agttgtgtgtgagtttattttcagtggattaccacttcat 47250258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 8439149 - 8439199
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || |||||||||||||| |||| ||||||||||||||||||||||    
T  8439149 caggacctcacagttgtgtgtgaatttattttcagtggattaccacttcat 8439199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 27229526 - 27229484
Alignment:
Q  246 acagttgtgtgtgagttt-aatttcagtggattaccacttcat 287  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  27229526 acagttgtgtgtgagttttaatttcagtggattaccacttcat 27229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 31288277 - 31288231
Alignment:
Q  241 atcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||    
T  31288277 atctcacagttgtgtgtaagtttaatttcagtggtttaccacttcat 31288231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 2146716 - 2146757
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  2146716 acagttgtgtgtgggtttattttcagtggattaccacttcat 2146757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 15634927 - 15634886
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  15634927 acagttgtgtgtgagtttattttcagtagattaccacttcat 15634886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 25112295 - 25112254
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  25112295 acagttgtgtgtgggtttattttcagtggattaccacttcat 25112254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 38033809 - 38033850
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  38033809 acagttgtgtgtgagtttattttcagtggagtaccacttcat 38033850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 40058318 - 40058359
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  40058318 acagttgtgtatgagtttattttcagtggattaccacttcat 40058359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 47557861 - 47557902
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  47557861 acagttgtatgtgagtttaatttcagtggtttaccacttcat 47557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 48444200 - 48444159
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  48444200 acagttgtgtgtaagtttaatttcagtgaattaccacttcat 48444159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 5463004 - 5462957
Alignment:
Q  240 gatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| ||||||||||||||||||||||||| ||||  ||||||||||    
T  5463004 gatctcacagttgtgtgtgagtttaatttcaatggagaaccacttcat 5462957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 27915634 - 27915587
Alignment:
Q  240 gatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| |||||||||| |||||||||||||| || |||||||||||||    
T  27915634 gatctcacagttgtgtatgagtttaatttcaatgaattaccacttcat 27915587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 7162831 - 7162797
Alignment:
Q  253 tgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||| ||||||||||||||||||||||    
T  7162831 tgtgtgagtttattttcagtggattaccacttcat 7162797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 43753802 - 43753760
Alignment:
Q  246 acagttgtgtgtgagttt-aatttcagtggattaccacttcat 287  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  43753802 acagttgtatgtgagttttaatttcagtggattaccacttcat 43753760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 5587368 - 5587401
Alignment:
Q  254 gtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||| ||||||||||||||||||    
T  5587368 gtgtgagtttaattttagtggattaccacttcat 5587401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 5592329 - 5592362
Alignment:
Q  254 gtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||| ||||||||||||||||||    
T  5592329 gtgtgagtttaattttagtggattaccacttcat 5592362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 28603095 - 28603132
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  28603095 ttgtatgtgagtttaatctcagtggattaccacttcat 28603132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 29484799 - 29484762
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  29484799 ttgtatgtgagtttaatttcagtggattatcacttcat 29484762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 41183895 - 41183936
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| |||||||||||| ||||||||||||| ||||||||    
T  41183895 acagttatgtgtgagtttattttcagtggattatcacttcat 41183936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 48146833 - 48146874
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||| | ||||| ||||||||||||||||    
T  48146833 acagttgtgtgtgagttaattttcattggattaccacttcat 48146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 18506319 - 18506283
Alignment:
Q  251 tgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  18506319 tgtgtgtgagtttaatttcagtggtttaccgcttcat 18506283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 23036244 - 23036212
Alignment:
Q  255 tgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||| ||||||||||||||||    
T  23036244 tgtgagtttaatttcaatggattaccacttcat 23036212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 35309927 - 35309975
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||| ||||||| ||||||||||||||||| ||| ||||||||    
T  35309927 ggatctcacaattgtgtgcgagtttaatttcagtggtttatcacttcat 35309975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 43170986 - 43170946
Alignment:
Q  247 cagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  43170986 cagttgtatgtgagtttaatttcaatggattaccacgtcat 43170946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 43203383 - 43203427
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||| || |||||||||  ||||||||    
T  43203383 cttacagttgtgtgtgagtttatttacagtggattttcacttcat 43203427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 32149631 - 32149561
Alignment:
Q  84 aacaatttggtttaagattttatttctaatccataata-taaaaaccatttattaaaagatatcaaccctt 153  Q
    |||||||| |||||||||||||||||| |||| ||||| |||||| ||||| |||||||||||||||||||    
T  32149631 aacaatttagtttaagattttatttctgatccgtaatattaaaaatcatttcttaaaagatatcaaccctt 32149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 13109850 - 13109891
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13109850 acagttgtgtgtgagtttaatttcagtggattaccacttcat 13109891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 48660095 - 48660143
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48660095 ggatctcacagttgtgtgtgagtttattttcagtggattaccacttcat 48660143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 35110156 - 35110106
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  35110156 caggaccttacagttgtgtgtgagtttaatttgagaggattaccacttcat 35110106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 41761468 - 41761418
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  41761468 caggacctcacagttgtgtgtgagtttattttcagtggattaccacttcat 41761418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 5055836 - 5055795
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  5055836 acagttgtgtgtgagtttattttcagtggattaccacttcat 5055795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 28455954 - 28455995
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  28455954 acagttgtgtgtgagtttattttcagtggattaccacttcat 28455995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 32007154 - 32007195
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  32007154 acagttgtgtgtgagtttattttcagtggattaccacttcat 32007195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 35945877 - 35945930
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaatatcaaaa 299  Q
    |||||||||||||| |||| |||||||||||||||||||||| ||| |||||||    
T  35945877 acagttgtgtgtgaatttattttcagtggattaccacttcatctaagatcaaaa 35945930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 39276430 - 39276475
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||    
T  39276430 acagttatgtgtgagtttattttcagtggattaccacttcatttaa 39276475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 41039351 - 41039310
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  41039351 acagttgtgtgtgagtttattttcagtggattaccacttcat 41039310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 41808282 - 41808323
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  41808282 acagttgtgtgtgagtttattttcagtggattaccacttcat 41808323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 45813059 - 45813018
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  45813059 acagttgtgtgtgagtttattttcagtggattaccacttcat 45813018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 13183227 - 13183183
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  13183227 cttacagttgtatgtgagtttaatttcagtgaattaccacttcat 13183183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 11688345 - 11688384
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  11688345 agttgtgtgtgagtttattttcagtggattaccacttcat 11688384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 192486 - 192536
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || ||||||||||||||||||| |||||| |||||||||||||||    
T  192486 caggacctcacagttgtgtgtgagtttattttcagcggattaccacttcat 192536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 7059547 - 7059585
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7059547 acagttgtgtgtgagtttaatttaagtggattaccactt 7059585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 20828 - 20869
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  20828 acagttgtgtgtgagtttatttttagtggattaccacttcat 20869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 778654 - 778695
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  778654 acagttgtgtgtgagtttaatttcagtgaattaccaattcat 778695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 5943749 - 5943802
Alignment:
Q  234 actcaggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||| || |||||||| |||||||||||||||| ||||||| ||||||||    
T  5943749 actcaggacctcacagttgtttgtgagtttaatttcaatggattatcacttcat 5943802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 7275761 - 7275802
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  7275761 acagttgtgtatgagtttaatttcagtggtttaccacttcat 7275802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 26032881 - 26032922
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  26032881 acagttttgtgtgagtttaatttcagtggattaccgcttcat 26032922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 29994427 - 29994390
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  29994427 ttgtgtgtgagtttaatttcagtggtttaccacttcat 29994390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 34305700 - 34305655
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||||    
T  34305700 acagttgtttgtaagtttaatttcattggattaccacttcatttaa 34305655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 4066038 - 4066082
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||    
T  4066038 cttacaattgtatgtgagtttaatttcagtgaattaccacttcat 4066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 21939013 - 21939063
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || ||||||||||| |||||||||||||| || ||||||||||||    
T  21939013 caggacctcacagttgtgtgcgagtttaatttcagcggtttaccacttcat 21939063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 2088949 - 2088912
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  2088949 ttgtatgtgagttcaatttcagtggattaccacttcat 2088912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 13097384 - 13097425
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||| |||||||||||||| | ||||||||||||||||    
T  13097384 acagttgtatgtgagtttaattttattggattaccacttcat 13097425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 25931201 - 25931164
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  25931201 ttgtgtgtgagtttaatttcaatagattaccacttcat 25931164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 26264584 - 26264543
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||| || |||| ||||||||    
T  26264584 acagttgtgtgtgagtttaatttcaatgtattatcacttcat 26264543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 32982398 - 32982357
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||| |||||||||| |||| |||||||    
T  32982398 acagttgtgtgtgagtttgatttcagtggtttactacttcat 32982357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 39112002 - 39112050
Alignment:
Q  234 actcaggatcttacagttgtgtgtgagtttaatttcagtggattaccact 283  Q
    |||||| |||| ||| |||||||||||||| |||||||||||||||||||    
T  39112002 actcagaatctcacaattgtgtgtgagttt-atttcagtggattaccact 39112050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 49783787 - 49783828
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||| ||||| |||||||||||||| ||||||||||||    
T  49783787 acagttgtatgtgaatttaatttcagtggtttaccacttcat 49783828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 31532173 - 31532132
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31532173 acagttgtgtgtgagtttaatttcagtggattaccacttcat 31532132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 28817329 - 28817377
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28817329 ggatctcacagttgtgtgtgagtttattttcagtggattaccacttcat 28817377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 42192694 - 42192646
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42192694 ggatctcacagttgtgtgtgagtttattttcagtggattaccacttcat 42192646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 42885247 - 42885295
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42885247 ggatctcacagttgtgtgtgagtttattttcagtggattaccacttcat 42885295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 1388 - 1347
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  1388 acagttgtgtgtgagtttattttcagtggattaccacttcat 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 70571 - 70530
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  70571 acagttgtgtgtgagtttattttcagtggattaccacttcat 70530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 1078696 - 1078655
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  1078696 acagttgtgtgtgagtttattttcagtggattaccacttcat 1078655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 6602566 - 6602525
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  6602566 acagttgtgtgtgagtttattttcagtggattaccacttcat 6602525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 6678019 - 6677978
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  6678019 acagttgtgtgtgagtttattttcagtggattaccacttcat 6677978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 7813402 - 7813443
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  7813402 acagttgtgtgtgagtttattttcagtggattaccacttcat 7813443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 9292098 - 9292139
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  9292098 acagttgtgtgtgagtttattttcagtggattaccacttcat 9292139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 29425435 - 29425472
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29425435 ttgtgtgtgagtttaatttcagtggattaccacttcat 29425472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 32333194 - 32333235
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  32333194 acagttgtgtgtgagtttattttcagtggattaccacttcat 32333235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 35779545 - 35779504
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  35779545 acagttgtgtgtgagtttattttcagtggattaccacttcat 35779504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 3822467 - 3822515
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  3822467 caggatctcacagttgtgtgtgagtttaattttagtgaattaccacttc 3822515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 5385418 - 5385462
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcattta 290  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  5385418 acagttgtgtgtgagtttaatttcagtgatttaccacttcattta 5385462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 7792734 - 7792782
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  7792734 ggatctcacagttgtgtgtgagtttattttcagtggattactacttcat 7792782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 40911305 - 40911353
Alignment:
Q  251 tgtgtgtgagtttaatttcagtggattaccacttcatttaatatcaaaa 299  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  40911305 tgtgtgtgagtttaatttcagtggcttaccacttcatctaagatcaaaa 40911353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 45264688 - 45264649
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  45264688 acagttttgtgtgagtttaatttcagtggattaccacttc 45264649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 39303389 - 39303431
Alignment:
Q  246 acagttgtgtgtgagttt-aatttcagtggattaccacttcat 287  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  39303389 acagttgtgtgtgagttttaatttcagtggattaccacttcat 39303431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 4531030 - 4530989
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  4531030 acagctgtgtgtgagtttaatttcagtggtttaccacttcat 4530989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 13891170 - 13891211
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  13891170 acagttgtgtgtgagtttattttcagtggtttaccacttcat 13891211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 18752418 - 18752466
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||||||||||||| ||||||||||||||||||  |||||||| |||    
T  18752418 cttacagttgtgtgtgggtttaatttcagtggattgacacttcatntaa 18752466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 20269604 - 20269651
Alignment:
Q  240 gatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| |||||    
T  20269604 gatctcacagttgtgtgtgagtttattttcaatggattaccatttcat 20269651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 21056233 - 21056280
Alignment:
Q  240 gatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| |||||    
T  21056233 gatctcacagttgtgtgtgagtttattttcaatggattaccatttcat 21056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 31969766 - 31969727
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  31969766 agttgtgtgtgaatttaatttcagtggtttaccacttcat 31969727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 10963283 - 10963249
Alignment:
Q  253 tgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||| ||||||||||||||||||||||    
T  10963283 tgtgtgagtttattttcagtggattaccacttcat 10963249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 33731511 - 33731473
Alignment:
Q  247 cagttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  33731511 cagttgtgtgtgagtttaattttagtggtttaccacttc 33731473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 40932784 - 40932830
Alignment:
Q  241 atcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||||||    
T  40932784 atctcacagttgtgtgtgactttaattttagtagattaccacttcat 40932830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 41849276 - 41849227
Alignment:
Q  249 gttgtgtgtgagtttaatttcagtggattaccacttcatttaatatcaaaa 299  Q
    |||||||||||||||||||||||| |||||||| ||||| ||| |||||||    
T  41849276 gttgtgtgtgagtttaatttcagt-gattaccatttcatctaagatcaaaa 41849227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 42364750 - 42364712
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  42364750 acagttgtgtgtgagtttaatttcagtagtttaccactt 42364712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 31695313 - 31695276
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  31695313 ttgtgtgtgagtttaatttcaatggtttaccacttcat 31695276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 39435362 - 39435403
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||  ||||||||| |||||||    
T  39435362 acagttgtgtgtgagtttaatttatgtggattacgacttcat 39435403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 33704296 - 33704341
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33704296 acagttgtgtgtgagtttattttcagtggattaccacttcatttaa 33704341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 4464207 - 4464248
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  4464207 acagttgtgtgtgagtttaatttcagtggtttaccacttcat 4464248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 10999461 - 10999416
Alignment:
Q  241 atcttacagttgtgtgtgagtttaatttcagtggattaccacttca 286  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  10999461 atctcacagttgtatgtgagtttaatttcagtggattaccacttca 10999416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 33621574 - 33621615
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  33621574 acagttgtgtgtgagtttaatttcagtggtttaccacttcat 33621615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 35218688 - 35218647
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  35218688 acagttgtgtgtgagtttattttcagtggattaccacttcat 35218647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 2959229 - 2959270
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  2959229 acagttgtgtgtgagtttaatttccgtggaataccacttcat 2959270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 9454773 - 9454728
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||    
T  9454773 acagttatatgtgagtttaatttcagtggtttaccacttcatttaa 9454728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 19145554 - 19145591
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19145554 ttgtgtgtgaatttaatttcagtggattaccacttcat 19145591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 21037370 - 21037411
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  21037370 acagttgtgtgtgagtttattttcagtgaattaccacttcat 21037411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 24619123 - 24619086
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24619123 ttgtgtgtgagtttaatttcagtcgattaccacttcat 24619086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 12252105 - 12252148
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  12252105 agttgtgtgtgagtttaattttaatggcttaccacttcatttaa 12252148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 361091 - 361132
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  361091 acagttatatgtgagtttaatttcagtggattaacacttcat 361132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 21000776 - 21000813
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  21000776 ttgtgtgtgggtttaatttcagtggtttaccacttcat 21000813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 28323016 - 28323053
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  28323016 ttgtgtgtgagtttagtttcagtggtttaccacttcat 28323053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 29009698 - 29009657
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||| |||| |||||||||||||    
T  29009698 acagttgtgtgtgagtttatttttagtgaattaccacttcat 29009657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 7014349 - 7014317
Alignment:
Q  255 tgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| |||||||||||||    
T  7014349 tgtgagtttaatttcagtgtattaccacttcat 7014317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 32295141 - 32295193
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||| ||||||| |||||| |||||||| ||||| |||| |||||||||||    
T  32295141 ggatctcacagttgagtgtgaatttaattttagtggtttacaacttcatttaa 32295193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 23262621 - 23262665
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  23262621 cttacagttgtgtgtgagtttattttcagtggattaccacttcat 23262665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 19181791 - 19181835
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  19181791 acagttgtgtgtgagtttaatttcagtggatta-cacttcatttaa 19181835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 21018303 - 21018344
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  21018303 acagttgtgtgtgagtttattttcagtggattaccacttcat 21018344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 29265955 - 29265996
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  29265955 acagttgtgtgtgagtttattttcagtggattaccacttcat 29265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 31909433 - 31909392
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  31909433 acagttgtgtgtgagtttattttcagtggattaccacttcat 31909392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 32143462 - 32143421
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  32143462 acagttgtgtgtgagtttattttcagtggattaccacttcat 32143421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 35317745 - 35317704
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  35317745 acagttgtgtgtgagtttattttcagtggattaccacttcat 35317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 40177707 - 40177745
Alignment:
Q  249 gttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  40177707 gttgtgtgtgagtttattttcagtggattaccacttcat 40177745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 2971064 - 2971105
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  2971064 acagttgtgtgtgagtttattttcggtggattaccacttcat 2971105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 3386939 - 3386902
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||||||||| |||||||||||||||||||||||||    
T  3386939 agttgtgtgtgaatttaatttcagtggattaccacttc 3386902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 4824987 - 4824946
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  4824987 acagttgtgtgtgagtttattttcaatggattaccacttcat 4824946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 6021073 - 6021110
Alignment:
Q  247 cagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    |||||||||||||||||| |||||||||||||||||||    
T  6021073 cagttgtgtgtgagtttattttcagtggattaccactt 6021110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 12257440 - 12257477
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12257440 ttgtgtgtgagtttattttcagtggattaccacttcat 12257477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 13204037 - 13204078
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  13204037 acagttatgtgtgagtttattttcagtggattaccacttcat 13204078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 27721511 - 27721550
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  27721511 acagttgtatgtgaatttaatttcagtggattaccacttc 27721550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 1191584 - 1191547
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  1191584 ttgtgtgtgagtttaatttcagtggcttacaacttcat 1191547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 2786351 - 2786391
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  2786351 acagttgtgtatgagtttaatt-cagtggattaccacttcat 2786391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 17984790 - 17984749
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  17984790 acagttgtgtgtgagtttaattttagtggcttatcacttcat 17984749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 28591398 - 28591357
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| |||||||||| ||||||| ||||||||||||    
T  28591398 acagttgtgtatgagtttaatgtcagtggtttaccacttcat 28591357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 17465170 - 17465198
Alignment:
Q  259 agtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||||||||    
T  17465170 agtttaatttcagtggattaccacttcat 17465198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 29674532 - 29674492
Alignment:
Q  241 atcttacagttgtgtgtgagtttaatttcagtggattacca 281  Q
    ||||||||||||||||| |||||||||| | ||||||||||    
T  29674532 atcttacagttgtgtgtaagtttaattttaatggattacca 29674492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 3113050 - 3113002
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3113050 ggatctcacagttgtgtgtgagtttattttcagtggattaccacttcat 3113002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 51665976 - 51665932
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  51665976 cttacagttgtgtgtgagtttattttcagtggattaccacttcat 51665932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 7824502 - 7824461
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  7824502 acagttgtgtgtgagtttattttcagtggattaccacttcat 7824461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 9349724 - 9349683
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  9349724 acagttgtgtgtgagtttattttcagtggattaccacttcat 9349683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 29689530 - 29689489
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  29689530 acagttgtgtgtgagtttattttcagtggattaccacttcat 29689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 43247698 - 43247657
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  43247698 acagttgtgtgtgagtttattttcagtggattaccacttcat 43247657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 54158346 - 54158387
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  54158346 acagttgtgtgtgagtttattttcagtggattaccacttcat 54158387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 55018082 - 55018041
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  55018082 acagttgtgtgtgagtttattttcagtggattaccacttcat 55018041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 55320446 - 55320407
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  55320446 agttgtgtgtgagtttattttcagtggattaccacttcat 55320407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 43775298 - 43775344
Alignment:
Q  241 atcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||    
T  43775298 atctcacagttgtatttgagtttaatttcagtggattaccacttcat 43775344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 4601505 - 4601546
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  4601505 acagttgtgtgtgagtttattttcagtggattaccagttcat 4601546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 27230746 - 27230787
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  27230746 acagttgtgtgtgaatttaatttcagtgaattaccacttcat 27230787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 33334688 - 33334729
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  33334688 acagttgtgtgtgagtttaatttcagtagattatcacttcat 33334729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 36229042 - 36229001
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  36229042 acagttgtgtgtgagtttattttcaatggattaccacttcat 36229001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 38257347 - 38257310
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||| |||||||||||||||    
T  38257347 ttgtgtgtgagtttaatttcagcggattaccacttcat 38257310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 42392849 - 42392812
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42392849 ttgtgtgtgagtttaatttcagtggtttaccacttcat 42392812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 52500918 - 52500959
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  52500918 acagttgtgtgtgagtttattttcagtagattaccacttcat 52500959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 54151729 - 54151688
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  54151729 acagttgtgtatgagtttattttcagtggattaccacttcat 54151688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 448923 - 448884
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttc 285  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  448923 acagttgtttgtgagtttaattttagtggattaccacttc 448884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 32001478 - 32001431
Alignment:
Q  240 gatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||||    
T  32001478 gatctcacagttgtgtgtgagtttattttcagtgatttaccacttcat 32001431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 287
Target Start/End: Complemental strand, 2590847 - 2590817
Alignment:
Q  257 tgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||||||||||||||    
T  2590847 tgagtttaatttcagtggattaccacttcat 2590817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 28844584 - 28844626
Alignment:
Q  246 acagttgtgtgtgagtttaattt-cagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  28844584 acagttgtgtgtgagtttatttttcagtggattaccacttcat 28844626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 475328 - 475288
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  475328 acagttgtgtgtgagtttaa-ttcagtgaattaccacttcat 475288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 7958649 - 7958702
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcatttaatatcaaaa 299  Q
    |||||| ||||| |||||| ||| |||||||||||||||||| ||||| |||||    
T  7958649 acagttatgtgtaagtttatttttagtggattaccacttcatctaataccaaaa 7958702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 40756775 - 40756734
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  40756775 acagttgcgtgtgagtttaatttcagtagtttaccacttcat 40756734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 47635052 - 47635012
Alignment:
Q  247 cagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| ||||| |||||||||||||| ||||||||||||||    
T  47635052 cagttatgtgtaagtttaatttcagttgattaccacttcat 47635012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 11708749 - 11708811
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaatatcaaaa 299  Q
    ||||| || ||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||    
T  11708749 caggacctcacagttgtgtgtgggtttattttcagtggattaccacttcatctaataccaaaa 11708811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 42578215 - 42578289
Alignment:
Q  213 attgcaaagtcggatgtcacgactcaggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||| |||||| |||| ||| | | | || ||||||||||||||||||| ||||||||||||||||||||||    
T  42578215 attgcaaggtcggacgtcatgacccggtacctcacagttgtgtgtgagtttattttcagtggattaccacttcat 42578289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 4851400 - 4851441
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  4851400 acagttgtgtgtgagtttaattttagtggattaccacttcat 4851441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 10639654 - 10639613
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  10639654 acagttgtgtgtgagtttattttcagtggattaccacttcat 10639613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 23839939 - 23839980
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  23839939 acagttgtgtgtgagtttattttcagtggattaccacttcat 23839980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 29659266 - 29659225
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  29659266 acagttgtgtgtgagtttattttcagtggattaccacttcat 29659225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 33083602 - 33083561
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  33083602 acagttgtgtgtgagtttattttcagtggattaccacttcat 33083561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 34460449 - 34460490
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  34460449 acagttgtgtgtgagtttattttcagtggattaccacttcat 34460490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 37197658 - 37197617
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  37197658 acagttgtgtgtgagtttattttcagtggattaccacttcat 37197617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 45125213 - 45125172
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  45125213 acagttgtgtgtgagtttattttcagtggattaccacttcat 45125172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 27137969 - 27137925
Alignment:
Q  243 cttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||| | |||||||||||||||||||||||||||||||||    
T  27137969 cttacagttttatgtgagtttaatttcagtggattaccacttcat 27137925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 19537387 - 19537428
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  19537387 acagttgtgtgtgtgtttattttcagtggattaccacttcat 19537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 26605704 - 26605745
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  26605704 acagttgtgtgtgaatttattttcagtggattaccacttcat 26605745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 34239880 - 34239823
Alignment:
Q  234 actcaggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||| | ||||||||||||| |||||||||||||| |  |||||||||||||||||    
T  34239880 actcagaaccttacagttgtgtatgagtttaatttcaataaattaccacttcatttaa 34239823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 39831488 - 39831451
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  39831488 ttgtgtgtgagtttaatttcagtggtttaccacttcat 39831451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 43778516 - 43778475
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  43778516 acagttgtgtgtgagtttattttcattggattaccacttcat 43778475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 44181942 - 44181897
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccactt 284  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||    
T  44181942 ggatctcacagttgtgtgtgagtttattttcagtggattatcactt 44181897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 11816599 - 11816557
Alignment:
Q  246 acagttgtgtgtgagttt-aatttcagtggattaccacttcat 287  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  11816599 acagttgtatgtgagttttaatttcagtggattaccacttcat 11816557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 33001773 - 33001823
Alignment:
Q  237 caggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||| || |||||| | ||||||||||||||||||||||||||| |||||    
T  33001773 caggacctcacagttatatgtgagtttaatttcagtggattaccatttcat 33001823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 38440238 - 38440204
Alignment:
Q  253 tgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||||||||||||| ||||||||||||||||||    
T  38440238 tgtgtgagtttaattttagtggattaccacttcat 38440204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 11459795 - 11459836
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||    
T  11459795 acagttgtgtgtgtgtttattttcaatggattaccacttcat 11459836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 19048838 - 19048875
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  19048838 ttgtgtgtgagtttagtttcagtggtttaccacttcat 19048875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 15782674 - 15782710
Alignment:
Q  251 tgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  15782674 tgtgtgggagtttaatttcagtggtttaccacttcat 15782710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 910 - 869
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  910 acagttgtgtgtgagtttattttcagtggattaccacttcat 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 13999 - 13958
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  13999 acagttgtgtgtgagtttattttcagtggattaccacttcat 13958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 19679 - 19638
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19679 acagttgtgtgtgagtttattttcagtggattaccacttcat 19638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 22243 - 22284
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  22243 acagttgcgtgtgagtttaatttcagtggattaccacttcat 22284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 56561 - 56602
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  56561 acagttgtgtgtgagtttattttcagtggattaccacttcat 56602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 10019 - 9980
Alignment:
Q  248 agttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  10019 agttgtgtgtgagtttattttcagtggattaccacttcat 9980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 14590 - 14623
Alignment:
Q  251 tgtgtgtgagtttaatttcagtggattaccactt 284  Q
    ||||||||||||||||||||||||||||||||||    
T  14590 tgtgtgtgagtttaatttcagtggattaccactt 14623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 8991 - 8950
Alignment:
Q  246 acagttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  8991 acagttgtgtgtgagtttaatttcagtgatttaccacttcat 8950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 15189 - 15137
Alignment:
Q  239 ggatcttacagttgtgtgtgagtttaatttcagtggattaccacttcatttaa 291  Q
    |||||| ||||||  |||| |||||||||||||||| ||||||||||||||||    
T  15189 ggatctcacagttacgtgtaagtttaatttcagtggcttaccacttcatttaa 15137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 34899 - 34940
Alignment:
Q  247 cagttgtgtgtgagttt-aatttcagtggattaccacttcat 287  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  34899 cagttgtatgtgagttttaatttcagtggattaccacttcat 34940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 114336 - 114373
Alignment:
Q  250 ttgtgtgtgagtttaatttcagtggattaccacttcat 287  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  114336 ttgtgtgtgagtttagtttcagtggtttaccacttcat 114373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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