View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17341_low_4 (Length: 243)

Name: NF17341_low_4
Description: NF17341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17341_low_4
NF17341_low_4
[»] chr7 (1 HSPs)
chr7 (18-243)||(43564885-43565110)
[»] chr1 (1 HSPs)
chr1 (25-243)||(43973499-43973717)
[»] chr8 (1 HSPs)
chr8 (25-243)||(36432840-36433058)
[»] chr6 (1 HSPs)
chr6 (77-243)||(8952110-8952276)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 43565110 - 43564885
Alignment:
Q  18 gatctcatcaaaactgagtctttatttgatttatctgagggaaagtttaaggttagagatgtttctttgttccatgatgttcctgagaatgtttctttcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43565110 gatctcatcaaaactgagtctttatttgatttatctgagggaaagtttaaggttagagatgtttctttgttccatgatgttcctgagaatgtttctttcg 43565011  T
Q  118 gttctttctctgaaatatgcaaaccctctgaatcaaatgcaccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggtttctttggatt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43565010 gttctttctctgaaatatgcaaaccctctgaatcaaatgctccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggtttctttggatt 43564911  T
Q  218 ctctcatgaaaccccgtctgatagat 243  Q
    ||||||||||||||||||||||||||    
T  43564910 ctctcatgaaaccccgtctgatagat 43564885  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 43973499 - 43973717
Alignment:
Q  25 tcaaaactgagtctttatttgatttatctgagggaaagtttaaggttagagatgtttctttgttccatgatgttcctgagaatgtttctttcggttcttt 124  Q
    |||||||||||||||||||||||||||| |||||||  ||||  || | ||  ||| |||||||||||||||||||| | |||||||||||  |||||||    
T  43973499 tcaaaactgagtctttatttgatttatccgagggaacatttactgtgaaaggcgttcctttgttccatgatgttcctaacaatgtttcttttagttcttt 43973598  T
Q  125 ctctgaaatatgcaaaccctctgaatcaaatgcaccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggtttctttggattctctcat 224  Q
    |||||  ||||||||| |||||||||||||||||||||||||| |  |||||   |||| || ||||||||||||||||||||||||||||||||| |||    
T  43973599 ctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtttctttggattctcccat 43973698  T
Q  225 gaaaccccgtctgatagat 243  Q
    |||||||| ||||||||||    
T  43973699 gaaaccccttctgatagat 43973717  T

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Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 36433058 - 36432840
Alignment:
Q  25 tcaaaactgagtctttatttgatttatctgagggaaagtttaaggttagagatgtttctttgttccatgatgttcctgagaatgtttctttcggttcttt 124  Q
    ||||||||||||| ||  |||||||||| |||||||| || |  ||||| | |||| ||||||| ||||||||||||||||||||||||||| |||| ||    
T  36433058 tcaaaactgagtcattgcttgatttatccgagggaaaattcactgttaggggtgttcctttgtttcatgatgttcctgagaatgtttctttcagttcatt 36432959  T
Q  125 ctctgaaatatgcaaaccctctgaatcaaatgcaccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggtttctttggattctctcat 224  Q
    ||||   ||||| ||||||||||| |||||||||||||||||| || || |    ||||||  |||||||||||||||||||||||||||||||||  ||    
T  36432958 ctcttctatatgtaaaccctctgagtcaaatgcaccaccttcactcgttgaccgtgttctttctttttctcacaaaggtggtttctttggattctccaat 36432859  T
Q  225 gaaaccccgtctgatagat 243  Q
    |||||||| ||||||||||    
T  36432858 gaaaccccatctgatagat 36432840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 8952110 - 8952276
Alignment:
Q  77 tgtttctttgttccatgatgttcctgagaatgtttctttcggttctttctctgaaatatgcaaaccctctgaatcaaatgcaccaccttcaatccttcaa 176  Q
    |||| |||||||||||||||||||| | | |||| ||||  ||||| ||||||  ||||||||| |||||||||||||||||||||||||| |  |||||    
T  8952110 tgttcctttgttccatgatgttcctaacagtgttccttttagttctgtctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaa 8952209  T
Q  177 aaagttcttgatttttctcacaaaggtggtttctttggattctctcatgaaaccccgtctgatagat 243  Q
     | |||| || |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  8952210 catgttcatgctttttctcgcaaaggtggtttctttggattctcccatgaaaccccttctgatagat 8952276  T

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