View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17341_low_5 (Length: 228)
Name: NF17341_low_5
Description: NF17341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17341_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43564751 - 43564531
Alignment:
| Q |
1 |
tattcctgaaatcaaatcttatgttgttgtcattcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564751 |
tattcctgaaatcaaatcctatgttgttgtcattcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgt |
43564652 |
T |
|
| Q |
101 |
gctgaaagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564651 |
gctgaaagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttata |
43564552 |
T |
|
| Q |
201 |
gtgttataagggttcatctca |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43564551 |
gtgttataagggttcatctca |
43564531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 36432705 - 36432486
Alignment:
| Q |
2 |
attcctgaaatcaaatcttatgttgttgtcattcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgtg |
101 |
Q |
| |
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||||||||||||| ||| |||| ||| |||||||||| |||||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||||| |
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| T |
36432705 |
attcctgaaatcagatcctatgctgtgatcattcctatcattgaaaacggttttaggtctgcacttcatcctggttctgatgaccattttatgatttgtg |
36432606 |
T |
|
| Q |
102 |
ctgaaagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatag |
201 |
Q |
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|||| ||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36432605 |
ctgagagtggttcaacaaaggtgaaagcattgagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatag |
36432506 |
T |
|
| Q |
202 |
tgttataagggttcatctca |
221 |
Q |
| |
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|| | | ||||||||||||| |
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| T |
36432505 |
tgctttgagggttcatctca |
36432486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43973851 - 43974071
Alignment:
| Q |
1 |
tattcctgaaatcaaatcttatgttgttgtcattcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | ||||||||| |||||||||| || ||| |||||||||| |||||||||| ||||||||| |
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| T |
43973851 |
tattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgt |
43973950 |
T |
|
| Q |
101 |
gctgaaagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttata |
200 |
Q |
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||||||||||| ||||| | ||| || ||| |||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| |||||||||| |
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| T |
43973951 |
gctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttata |
43974050 |
T |
|
| Q |
201 |
gtgttataagggttcatctca |
221 |
Q |
| |
|
||| ||| ||||||||||||| |
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|
| T |
43974051 |
gtgctattagggttcatctca |
43974071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8952409 - 8952456
Alignment:
| Q |
1 |
tattcctgaaatcaaatcttatgttgttgtcattcctataattgaaaa |
48 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
8952409 |
tattcctgaaatcaaatcctatgttgttgtcattcctatcaatgaaaa |
8952456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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