View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_high_13 (Length: 235)
Name: NF17342_high_13
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47126803 - 47127022
Alignment:
| Q |
1 |
ctctggtgtaccttgctcaggcataaacctacgactaaccgttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatga |
100 |
Q |
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| T |
47126803 |
ctctggtgtaccttgctcaggcataaacctacgactaaccgttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatga |
47126902 |
T |
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| Q |
101 |
aaagcagaagccacccatatgataatggtgcaagattgtatgagatcgattcttgtcttcatttctggccaccatgacctatcctttaagtcgccatgac |
200 |
Q |
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| T |
47126903 |
aaagcagaagccacccatataataatggtgcaagattgtatgagatcgattcttgtcttcattactggccaccatgacctatcctttaagtcgccatgac |
47127002 |
T |
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| Q |
201 |
cctcagtgcggacttctttc |
220 |
Q |
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| T |
47127003 |
cctcagtgcggacttctttc |
47127022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 9606339 - 9606270
Alignment:
| Q |
59 |
taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatgg |
128 |
Q |
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| T |
9606339 |
taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg |
9606270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 46709155 - 46709234
Alignment:
| Q |
41 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
120 |
Q |
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| T |
46709155 |
gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat |
46709234 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 6456151 - 6456223
Alignment:
| Q |
66 |
cataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
138 |
Q |
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| T |
6456151 |
cataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattg |
6456223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 6449686 - 6449756
Alignment:
| Q |
68 |
taagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
138 |
Q |
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| T |
6449686 |
taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattg |
6449756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 7457984 - 7458044
Alignment:
| Q |
74 |
tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag |
134 |
Q |
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| T |
7457984 |
tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag |
7458044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 7470386 - 7470446
Alignment:
| Q |
74 |
tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag |
134 |
Q |
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| T |
7470386 |
tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag |
7470446 |
T |
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