View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_high_5 (Length: 432)
Name: NF17342_high_5
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 20361935 - 20362345
Alignment:
| Q |
19 |
atggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgcccctaacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361935 |
atggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgcccctaacc |
20362034 |
T |
|
| Q |
119 |
cttgattatgtattccttttgcaggaatctacctgccatgaatatgcttgttttggttgcgctggaaagacttgtttgtaggtgtagttaattaaataaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362035 |
cttgattatgtattccttttgcaggaatctacctgccatggatatgcttgttttggttgcgctggaaagacttgtttgtaggtgtagttaattaaataaa |
20362134 |
T |
|
| Q |
219 |
tatgatgggtgtttatgactttatgtaccatggtatttctgtgtaattgggatgatatctctcactgtttcatatgaacatatctatgtcttgaatcctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362135 |
tatgatgggtgtttatgactttatgtaccatggtatttctgtgtaattgggatgatatctctcactgtttcatatgaacatatctatgtcttgaatcctt |
20362234 |
T |
|
| Q |
319 |
tagagtttcgtttcttttttaatttgatccgcgaaccattatgtctgctcccattgaatgactagaagttgttatgtcacagtcatttattacttccatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362235 |
tagagtttcgtttcttttttaatttgatccgcgaaccattatgtctgctcccattgaatgactagaagttgttatgtcacagtcatttattacttccatt |
20362334 |
T |
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| Q |
419 |
gctaaattcat |
429 |
Q |
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||||||||||| |
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| T |
20362335 |
gctaaattcat |
20362345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 21549743 - 21549882
Alignment:
| Q |
19 |
atggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgcccctaacc |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
21549743 |
atggttagtaatcataacaacatatccatcttttcattttaccatacatatacgttgctgctgctgcattatatttaatcacatcggtatgcccctaacc |
21549842 |
T |
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| Q |
119 |
cttgattatgtattccttttgcaggaatctacctgccatg |
158 |
Q |
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||| |||||| ||||||||||||||||||||||||||||| |
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| T |
21549843 |
cttaattatgcattccttttgcaggaatctacctgccatg |
21549882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 268 - 424
Target Start/End: Original strand, 21549882 - 21550044
Alignment:
| Q |
268 |
ggatgatatctctcactgtttcatatgaacatatctatgtcttgaatcctttagagtttcgtttcttttttaatttgatccgcgaaccattatgtctg-- |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| |
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| T |
21549882 |
ggatgatatctctcactgtttcatatgaacatatctatgtcttgaatcctttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgta |
21549981 |
T |
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| Q |
366 |
----ctcccattgaatgactagaagttgttatgtcacagtcatttattacttccattgctaaa |
424 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
21549982 |
ttttctcccattgaatgactccaagttgttatgtcatagtcatttattacttccattgctaaa |
21550044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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