View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_high_6 (Length: 362)
Name: NF17342_high_6
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 48291078 - 48290743
Alignment:
| Q |
17 |
atgaaactaactaaccataagcaggttcagagggcaaggcaaaaataatttaaaattacaaatatcaatttgggatattttatactacttccattaacct |
116 |
Q |
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| T |
48291078 |
atgaaactaactaaccataagcaggttcagagggcaaggcaaaaataatttaaaattacaaatatcaatttgggatattttatactacttccattaacct |
48290979 |
T |
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| Q |
117 |
ttatataatatgaaagcttaataaatttaatctctcccccatannnnnnn-aaattaataataacaatatctatttctctccttttattggccaaaattg |
215 |
Q |
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| T |
48290978 |
ttatataatatgaaagcttaataaatttaatctctcccccatattttttttaaattaataataataatatctatttctctccttttattggtcaaaattg |
48290879 |
T |
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| Q |
216 |
atgaaattaattaaatgtgaagaaggtttgagaaaacagaaaattaaagaggtagatgttgataataagaaatataagaagcgttcaaagcttgcaatga |
315 |
Q |
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| T |
48290878 |
atgaaattaattaaatgtgaagaaggtttgagaaaacagaaaattaaagaggtagatgttgataataagaaatataagaagcgttcaaagcttgcaatga |
48290779 |
T |
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| Q |
316 |
gtggtgtaaatggaaagggacatgaagaaagtgatg |
351 |
Q |
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| T |
48290778 |
gtggtgtaaatggaaagggacatgaagaaagagatg |
48290743 |
T |
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