View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_high_9 (Length: 261)
Name: NF17342_high_9
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 40126513 - 40126280
Alignment:
| Q |
13 |
aatataccttattcatgttgtaggggcagctatcagacggtacagtaattgcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126513 |
aatataccttattcatgttgtaggggcagctatcagacggtacagtaattgcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgt |
40126414 |
T |
|
| Q |
113 |
gaatgagataggaatgatatctggacttcaacatccaaatcttgttaagctccatggatgttgtgtggaagggaaccaactaattctaatatacgagtat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126413 |
gaatgagataggaatgatatctggacttcaacatccaaatcttgttaagctccatggatgttgtgtggaagggaaccaactaattctaatatacgagtat |
40126314 |
T |
|
| Q |
213 |
atggaaaataattgtctatctcgcattctttttg |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40126313 |
atggaaaataattgtctatctcgcattctttttg |
40126280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 31289459 - 31289341
Alignment:
| Q |
63 |
gcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagc |
162 |
Q |
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||||| ||||| || || ||||||||||||||||| || ||||||||| | ||||||||||||||||| |||| | |||||||| |||||||||| | |
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| T |
31289459 |
gcagtgaagcaactttcttcaaaatcaaagcaagggaatcgtgagtttttaaatgagataggaatgatttctgctttgcaacatccttatcttgttaaac |
31289360 |
T |
|
| Q |
163 |
tccatggatgttgtgtgga |
181 |
Q |
| |
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|||| || ||||||||||| |
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| T |
31289359 |
tccacggttgttgtgtgga |
31289341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 31303274 - 31303156
Alignment:
| Q |
63 |
gcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagc |
162 |
Q |
| |
|
||||| ||||| || || || |||||||||||||| || ||||||||| | ||||||||||| ||||| |||| | |||||||| |||||||||| | |
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| T |
31303274 |
gcagtgaagcaactttcttctaaatcaaagcaagggaatcgtgagtttttaaatgagataggcatgatttctgctttgcaacatccttatcttgttaaac |
31303175 |
T |
|
| Q |
163 |
tccatggatgttgtgtgga |
181 |
Q |
| |
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|||| || ||||||||||| |
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| T |
31303174 |
tccacggttgttgtgtgga |
31303156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 31462657 - 31462760
Alignment:
| Q |
60 |
attgcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgtta |
159 |
Q |
| |
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|||||||| || |||||||| || |||||||||||||||||||| || || || || || ||||| |||||||||| | || |||||||||||||| | |
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| T |
31462657 |
attgcagttaaacagctctcttccaaatcaaagcaaggaaaccgcgaattcgttaacgaaataggcatgatatctgctttgcagcatccaaatcttgtga |
31462756 |
T |
|
| Q |
160 |
agct |
163 |
Q |
| |
|
|||| |
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|
| T |
31462757 |
agct |
31462760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 31382548 - 31382430
Alignment:
| Q |
63 |
gcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagc |
162 |
Q |
| |
|
||||| ||||| || || || |||||||||||||| || ||||||||| | || |||||||||||||| |||| | ||||| || |||||||||| | |
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|
| T |
31382548 |
gcagtgaagcaactttcttctaaatcaaagcaagggaatcgtgagtttctaaacgagataggaatgatttctgctttgcaacacccttatcttgttaaac |
31382449 |
T |
|
| Q |
163 |
tccatggatgttgtgtgga |
181 |
Q |
| |
|
|| |||| ||||||||||| |
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|
| T |
31382448 |
tctatggttgttgtgtgga |
31382430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 31279299 - 31279178
Alignment:
| Q |
63 |
gcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagc |
162 |
Q |
| |
|
||||| ||||| || || || ||||||| |||||| || ||||| ||| | || |||||||||||||| |||| | |||||||| |||||||||| | |
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| T |
31279299 |
gcagtgaagcaactttcttctaaatcaacgcaagggaatcgtgaatttttaaacgagataggaatgatttctgctttgcaacatccttatcttgttaaac |
31279200 |
T |
|
| Q |
163 |
tccatggatgttgtgtggaagg |
184 |
Q |
| |
|
|| |||| |||||||||||||| |
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| T |
31279199 |
tctatggttgttgtgtggaagg |
31279178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 31313937 - 31313892
Alignment:
| Q |
85 |
aatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgat |
130 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||||||||| |
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|
| T |
31313937 |
aatcaaagcaagggaaccgtgagtttttaaatgagataggaatgat |
31313892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 31354020 - 31353902
Alignment:
| Q |
63 |
gcagtaaagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagc |
162 |
Q |
| |
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||||| ||||| || || || |||||||||||||| || ||||||||| | ||||||||||| ||||| |||| | ||||| || |||||||||| | |
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| T |
31354020 |
gcagtgaagcaactttcttctaaatcaaagcaagggaatcgtgagtttttaaatgagataggcatgatttctgcgttgcaacacccttatcttgttaaac |
31353921 |
T |
|
| Q |
163 |
tccatggatgttgtgtgga |
181 |
Q |
| |
|
| |||| ||||||||||| |
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|
| T |
31353920 |
tttatggttgttgtgtgga |
31353902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 20061955 - 20062061
Alignment:
| Q |
69 |
aagcagctctcatcaaaatcaaagcaaggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagctccatg |
168 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || || || ||||| || || || ||||||||||||| | || ||||||||||||||||||||| ||| |
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|
| T |
20061955 |
aagcagctctcctcaaaatcaaaccaagggaatcgcgaatttgttaacgaaatcggaatgatatctgctttgcagcatccaaatcttgttaagctctatg |
20062054 |
T |
|
| Q |
169 |
gatgttg |
175 |
Q |
| |
|
| ||||| |
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|
| T |
20062055 |
gctgttg |
20062061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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