View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_10 (Length: 351)
Name: NF17342_low_10
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 384008 - 384335
Alignment:
| Q |
10 |
catcatcattcatataaacctcaaaagtaatctcatcttttgaaggaaccaccatgttataaatcctagcaataagatcatgtctactcttcaactccat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384008 |
catcatcattcatataaacctcaaaagtaatctcatcttttgaaggaaccaccatgttataaatcctagcaataagatcatgtctactcttcaactccat |
384107 |
T |
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| Q |
110 |
agtagccaacaacccttgacagtatcttctaccactagcataaaacttaaacgttgtttggccttctttcaacaacaaaggagtatcatccccgccatcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384108 |
agtagccaacaacccttgacagtatcttctaccactagcataaaacttaaacgttgtttggccttctttcaacaacaaaggagtatcatccccgccatcg |
384207 |
T |
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| Q |
210 |
ccgatccctaaaagactgaaatttttctcaaaaattgaatctttagcagcaaaatgtgaagcccatgaaagtgctatgttctcgttttcctttttaccag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384208 |
ccgatccctaaaagactgaaatttttctcaaaaattgaatctttagcagcaaaatgtgaagcccatgaaagtgctatgttctcgttttcctttttaccag |
384307 |
T |
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| Q |
310 |
tgaagtaattgagagcgaacatgataag |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
384308 |
tgaagtaattgagagcgaacatgataag |
384335 |
T |
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