View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_12 (Length: 287)
Name: NF17342_low_12
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 48931659 - 48931925
Alignment:
| Q |
1 |
ggaaatgaatggtgtggaagctgaaaggccactagagaaaatagattatgtgtttaaggtggttgtgattggtgactcagcagtaggaaagactcaaatg |
100 |
Q |
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| T |
48931659 |
ggaaatgaatggtgtggaagctgaaaggccactacagaaaatagattatgtgtttaaggtggttgtgattggtgactcggcagtaggaaagactcaaatg |
48931758 |
T |
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| Q |
101 |
ctgtcaaggtttgcaaagaatgagttctgctttgactcaaaatcaaccattggagttgaatttcagactagaactgtcacaattaatggtaaactcatca |
200 |
Q |
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| T |
48931759 |
ctgtcaaggtttgcaaagaatgagttctgctttgactcaaaatcaaccattggagttgaatttcagactagaactgtcacaattaatggtaaactcatca |
48931858 |
T |
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| Q |
201 |
aagctcagatctgggatactgctggccaagaaaggtttcttttcttcctctcttttacttgcttctt |
267 |
Q |
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| T |
48931859 |
aagctcagatctgggatactgctggccaagaaaggtttcttttcttcctctcttttacttgcttctt |
48931925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 18233885 - 18233847
Alignment:
| Q |
200 |
aaagctcagatctgggatactgctggccaagaaaggttt |
238 |
Q |
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| T |
18233885 |
aaagcacagatctgggatactgctggacaagaaaggttt |
18233847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 34 - 237
Target Start/End: Complemental strand, 9527780 - 9527577
Alignment:
| Q |
34 |
agagaaaatagattatgtgtttaaggtggttgtgattggtgactcagcagtaggaaagactcaaatgctgtcaaggtttgcaaagaatgagttctgcttt |
133 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||| |
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| T |
9527780 |
agagaaaatagattatgtgtttaaggttgttgtcattggtgactcagcagtaggaaagactcaaatactatcaaggttttcaaagaatgagttttgcttt |
9527681 |
T |
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| Q |
134 |
gactcaaaatcaaccattggagttgaatttcagactagaactgtcacaattaatggtaaactcatcaaagctcagatctgggatactgctggccaagaaa |
233 |
Q |
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|||||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
9527680 |
gactcaaagtcaactattggtgttgaatttcaaactaggactgtcactattaatggtaaagtaattaaagctcagatctgggatactgctggccaagaaa |
9527581 |
T |
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| Q |
234 |
ggtt |
237 |
Q |
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|||| |
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| T |
9527580 |
ggtt |
9527577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 45233710 - 45233664
Alignment:
| Q |
190 |
taaactcatcaaagctcagatctgggatactgctggccaagaaaggt |
236 |
Q |
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| T |
45233710 |
taaactcatcaaagctcaaatatgggacactgccggccaagaaaggt |
45233664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 31789545 - 31789578
Alignment:
| Q |
203 |
gctcagatctgggatactgctggccaagaaaggt |
236 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
31789545 |
gctcagatctgggatactgctggtcaagaaaggt |
31789578 |
T |
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