View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_16 (Length: 247)
Name: NF17342_low_16
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 34916815 - 34917061
Alignment:
| Q |
1 |
tagctaaaaggttaccaggaagaactgaaaactcaatcaaaaaccattggaatgcaacaaagagaagacaatactccaaaagaaagggtagatcaaagta |
100 |
Q |
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| T |
34916815 |
tagctaaaaggttaccaggaagaactgaaaactcaatcaaaaaccattggaatgcaacaaagagaagacaatactccaaaagaaagggtagatcaaagta |
34916914 |
T |
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| Q |
101 |
ccctaaaggaactcttctacaaaaatatatcaagagcttaaacctagacgaaaaccctccgaaagattatagaagaaaaccttcagctaatgctataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916915 |
ccctaaaggaactcttctacaaaaatatatcaagagcttaaacctagacgaaaatcctccgaaagattatagaagaaaaccttcagctaatgctataaaa |
34917014 |
T |
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| Q |
201 |
aacaaaaccaacagaagcacaacaatatcctctcagtctcaacaaac |
247 |
Q |
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| T |
34917015 |
aacaaaaccaacagaagcacaacaatatcctctcagtctcaacaaac |
34917061 |
T |
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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 21549670 - 21549591
Alignment:
| Q |
6 |
aaaaggttaccaggaagaactgaaaactcaatcaaaaaccattggaatgcaacaaagagaagacaatactccaaaagaaa |
85 |
Q |
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| T |
21549670 |
aaaaggttacctgggagaactgaaaactcaattaaaaaccattggtatgcaacaaagagaagagaatattcaaaaagaaa |
21549591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 21549574 - 21549495
Alignment:
| Q |
111 |
actcttctacaaaaatatatcaagagcttaaacctagacgaaaaccctccgaaagattatagaagaaaaccttcagctaa |
190 |
Q |
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| T |
21549574 |
actcttctacaagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaa |
21549495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 29671265 - 29671209
Alignment:
| Q |
15 |
ccaggaagaactgaaaactcaatcaaaaaccattggaatgcaacaaagagaagacaa |
71 |
Q |
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||||||||||||||||| | || ||||| ||||||||||| ||||| ||||||||| |
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| T |
29671265 |
ccaggaagaactgaaaatgccataaaaaatcattggaatgccacaaaaagaagacaa |
29671209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 43866509 - 43866587
Alignment:
| Q |
6 |
aaaaggttaccaggaagaactgaaaactcaatcaaaaaccattggaatgcaacaaagagaagacaatactccaaaagaa |
84 |
Q |
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||||| || |||||||||||||| || |||| ||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
43866509 |
aaaagattgccaggaagaactgagaatgcaataaaaaaccattggaatgcaacaaagagaaggcaatattccaaaagaa |
43866587 |
T |
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