View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17342_low_2 (Length: 617)
Name: NF17342_low_2
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 48 - 617
Target Start/End: Original strand, 47126248 - 47126824
Alignment:
| Q |
48 |
acacgacacttacatgatgacaccaataataatttaaga---tgaaataattgaatgtacccacatatgtttggatcgtgtcggacaccaaac----ctt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
47126248 |
acacgacacttacatgatgacaccaataataatttaagaaaatgaaataattgaatgtacccacatatgtttggatcgtgtcgaacaccaaacacacctt |
47126347 |
T |
|
| Q |
141 |
caatctaaagtgtcggtgatacatagtttattcgataccaaagctaagtctttggttagataaatagcaagaattcaaagagaatggtttcagatggata |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47126348 |
caatctaaagtgtcggtgatacatagtttattcgacaccaaagctaagtctttggttagataaatagcaaaaattcaaagagaatggtttcagatggata |
47126447 |
T |
|
| Q |
241 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtatatggcaatttcactggcccatttct |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47126448 |
tgctgttgggaattcccttaccagtgagtccaccctccctagaataatcagaggtattgggaaacagaagggtataaggcaatttcactggcccatttct |
47126547 |
T |
|
| Q |
341 |
gttcttcaaacttgggtctttgttccttatcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtct |
440 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126548 |
gttcttcaaacttgggtccttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcagcgtct |
47126647 |
T |
|
| Q |
441 |
gcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttggaact |
540 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126648 |
gcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttggaact |
47126747 |
T |
|
| Q |
541 |
gagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126748 |
gagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggc |
47126824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University