View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_3 (Length: 519)
Name: NF17342_low_3
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 48291561 - 48291059
Alignment:
| Q |
13 |
attatactataaaggaaaaggtagcttcaatgtaaatcaagatatttaaatttattgtagttgtttagtttaataaaatgtttttgtcaaatttgtacnn |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48291561 |
attatactataaaggaaaaggtagcttcaatgtaaatcaagatatttaaatttattgtagttgtttagattaataaaatgtttttgtcaaatttgtacaa |
48291462 |
T |
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| Q |
113 |
nnnnnnnnnnnnngagttttgtcaaaccattatcttagcagacacccaatattaaatactgtattttagttgaattgctgcagagctcagtcttgttgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48291461 |
acaaaaaaa----gagttttgtcaaaccattatcttagcagacacacaatattaaatactgtattttagttgaattgctgcagagctcagtcttgttgtt |
48291366 |
T |
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| Q |
213 |
tcttcaaataataattaaaatatggattatgtcttctagtgattatactagaattattacagaaatatgtatttaacaagtactttataaattacagtac |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48291365 |
tcttcaaataataattaaaatatggattatgtcttctagtgattatactagaattattacagaaatatgtattcaacaagtactttataaattacagtac |
48291266 |
T |
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| Q |
313 |
accctatgtgnnnnnnngttgcacaaattattattataccctatgtaatgtagtattactagtctgtgacaagnnnnnnncattttaatgtagctattta |
412 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48291265 |
accctatttgtttttttgttgcacaaattattattataccctatgtaatgtagtattactagtctgtgacaagaaaaaaacattttaatgtagctattta |
48291166 |
T |
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| Q |
413 |
attaaataatgagggagctacgccgtcagccaagggtagagtcacaattttaaatatatttattagcacaagatgctgtcagatgaaatgaaactaacta |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48291165 |
attaaataatgagggagctacgccgtcagccaagggtagagtcacaattttaaatatatttattagcacaagatgctgtcagatgaaatgaaactaacta |
48291066 |
T |
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| Q |
513 |
accataa |
519 |
Q |
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| T |
48291065 |
accataa |
48291059 |
T |
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