View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17342_low_4 (Length: 481)

Name: NF17342_low_4
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17342_low_4
NF17342_low_4
[»] chr1 (15 HSPs)
chr1 (18-461)||(29099635-29100070)
chr1 (206-321)||(19258742-19258857)
chr1 (204-323)||(2509028-2509147)
chr1 (204-323)||(34307206-34307325)
chr1 (204-323)||(39249931-39250050)
chr1 (204-323)||(46901803-46901922)
chr1 (18-87)||(15495979-15496048)
chr1 (239-321)||(28647392-28647474)
chr1 (31-90)||(10494882-10494941)
chr1 (205-283)||(10146971-10147049)
chr1 (22-79)||(26842000-26842057)
chr1 (18-86)||(26236753-26236821)
chr1 (47-87)||(2077379-2077419)
chr1 (257-321)||(8848923-8848987)
chr1 (248-323)||(9642933-9643009)
[»] chr7 (23 HSPs)
chr7 (206-323)||(23980137-23980254)
chr7 (206-323)||(5811231-5811348)
chr7 (204-323)||(7699951-7700070)
chr7 (204-323)||(7700149-7700268)
chr7 (204-323)||(7700347-7700466)
chr7 (204-323)||(7700545-7700664)
chr7 (204-323)||(42221031-42221150)
chr7 (206-323)||(13108154-13108270)
chr7 (206-323)||(31148296-31148413)
chr7 (204-323)||(28307563-28307682)
chr7 (204-323)||(36346633-36346751)
chr7 (204-323)||(21807390-21807509)
chr7 (204-323)||(26972271-26972390)
chr7 (204-323)||(34108430-34108549)
chr7 (204-326)||(30887704-30887826)
chr7 (238-323)||(20086696-20086781)
chr7 (251-323)||(46475075-46475147)
chr7 (204-323)||(45782728-45782847)
chr7 (248-323)||(34828113-34828188)
chr7 (205-323)||(38321014-38321132)
chr7 (206-323)||(15020288-15020402)
chr7 (248-291)||(42950113-42950156)
chr7 (18-91)||(21590510-21590583)
[»] chr6 (6 HSPs)
chr6 (206-323)||(14022940-14023057)
chr6 (206-323)||(24208450-24208567)
chr6 (204-323)||(3986973-3987092)
chr6 (204-323)||(13697573-13697691)
chr6 (204-323)||(3118115-3118234)
chr6 (204-323)||(15345727-15345844)
[»] chr2 (16 HSPs)
chr2 (206-319)||(37914308-37914421)
chr2 (204-319)||(36315565-36315680)
chr2 (204-323)||(44958117-44958236)
chr2 (204-323)||(33732573-33732692)
chr2 (204-323)||(37498931-37499052)
chr2 (205-323)||(3830965-3831081)
chr2 (204-323)||(14572999-14573118)
chr2 (248-323)||(24137160-24137235)
chr2 (206-323)||(6376306-6376418)
chr2 (18-89)||(6705611-6705682)
chr2 (204-323)||(16089826-16089944)
chr2 (18-90)||(40900295-40900367)
chr2 (255-323)||(41188824-41188892)
chr2 (18-90)||(38531278-38531350)
chr2 (19-82)||(34660240-34660303)
chr2 (18-86)||(17282046-17282114)
[»] chr8 (15 HSPs)
chr8 (204-323)||(30432343-30432462)
chr8 (204-323)||(12665348-12665468)
chr8 (204-323)||(42162602-42162721)
chr8 (204-323)||(44081784-44081903)
chr8 (206-323)||(33726017-33726135)
chr8 (204-321)||(36189220-36189337)
chr8 (248-323)||(31318853-31318928)
chr8 (204-323)||(10203668-10203787)
chr8 (204-323)||(18184557-18184676)
chr8 (204-323)||(43186031-43186150)
chr8 (248-323)||(38845091-38845165)
chr8 (18-87)||(15050070-15050139)
chr8 (216-291)||(31547-31622)
chr8 (221-323)||(42668850-42668951)
chr8 (19-87)||(6443990-6444057)
[»] chr5 (19 HSPs)
chr5 (204-323)||(1815684-1815803)
chr5 (204-323)||(40888010-40888129)
chr5 (204-323)||(9408107-9408226)
chr5 (204-323)||(39370931-39371050)
chr5 (206-323)||(2237282-2237399)
chr5 (235-323)||(17225352-17225440)
chr5 (204-321)||(4300613-4300730)
chr5 (215-321)||(14831559-14831665)
chr5 (206-323)||(13347134-13347251)
chr5 (204-296)||(33404531-33404623)
chr5 (209-323)||(41003918-41004031)
chr5 (204-323)||(27553441-27553560)
chr5 (238-323)||(31800596-31800681)
chr5 (204-288)||(12164255-12164339)
chr5 (206-289)||(19596169-19596252)
chr5 (30-87)||(40599887-40599944)
chr5 (19-82)||(7271788-7271851)
chr5 (204-323)||(19124540-19124657)
chr5 (17-65)||(24867100-24867148)
[»] chr4 (15 HSPs)
chr4 (204-319)||(45829329-45829444)
chr4 (204-319)||(46192363-46192478)
chr4 (204-323)||(44275710-44275829)
chr4 (204-323)||(3672278-3672397)
chr4 (204-323)||(6112634-6112753)
chr4 (204-323)||(7217769-7217888)
chr4 (204-323)||(28093164-28093283)
chr4 (204-323)||(49243819-49243938)
chr4 (204-323)||(21391023-21391142)
chr4 (204-323)||(35544916-35545035)
chr4 (248-323)||(51038811-51038887)
chr4 (18-86)||(45873212-45873280)
chr4 (204-244)||(43245522-43245562)
chr4 (205-321)||(54849793-54849909)
chr4 (18-86)||(47518552-47518620)
[»] chr3 (20 HSPs)
chr3 (204-323)||(46112012-46112131)
chr3 (204-323)||(21559565-21559684)
chr3 (204-323)||(36749410-36749529)
chr3 (206-323)||(39467169-39467286)
chr3 (204-323)||(34749966-34750085)
chr3 (204-323)||(36370406-36370525)
chr3 (204-323)||(43999993-44000112)
chr3 (206-314)||(39072350-39072458)
chr3 (204-323)||(22894684-22894803)
chr3 (204-323)||(51339851-51339968)
chr3 (204-323)||(30735564-30735682)
chr3 (204-296)||(29460664-29460756)
chr3 (204-296)||(29471516-29471608)
chr3 (204-288)||(38231297-38231381)
chr3 (150-203)||(37067076-37067129)
chr3 (208-323)||(20856221-20856334)
chr3 (230-320)||(53638165-53638255)
chr3 (31-89)||(31699315-31699373)
chr3 (207-300)||(29820390-29820483)
chr3 (30-86)||(18269807-18269863)
[»] scaffold0062 (1 HSPs)
scaffold0062 (204-326)||(6722-6844)
[»] scaffold0092 (1 HSPs)
scaffold0092 (18-90)||(23276-23348)
[»] scaffold0043 (1 HSPs)
scaffold0043 (204-296)||(87259-87350)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 29099635 - 29100070
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaagacccagtgtcagaaaataactcttg 117  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29099635 tcaccaccaagaaccaccacgagcaccaccacagaagacccagtatcagcaccaccatggaaaccaccacaaaagacccagtgtcagaaaataactcttg 29099734  T
Q  118 aggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcggtcttatacataaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29099735 aggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaactcatgttttgtagctcgagctggcggtcttatacataaac 29099834  T
Q  218 catcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaa 317  Q
    || |||||||| ||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29099835 caccttagatggcatacactc-tttacgtccacacacatttgtgacatgtgacaaaaacattgaaaaaagaaattaaaaggggtgatgatgtgatgtgaa 29099933  T
Q  318 attacttaacaaagannnnnnnnnnaggaaactcaaccaagatctatatctatatcaatacgtttatctgttgacatagtggaaacacgtgttttgtgaa 417  Q
    |||||||||  ||            |||||||| ||| |||||||||||||      ||||||||||||||| |||||||||||||||||||||||||||    
T  29099934 attacttaa-taattttttttttttaggaaacttaacaaagatctatatct------atacgtttatctgttaacatagtggaaacacgtgttttgtgaa 29100026  T
Q  418 aattttagtactatatctatatctatacgtttatctgttgacat 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29100027 aattttagtactatatctatatctatacgtttatctgttgacat 29100070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 321
Target Start/End: Complemental strand, 19258857 - 19258742
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    ||||||||||||||||| || || |||||||  |||||| | |||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaaaaagagatgaaaaggggtggtg 19258758  T
Q  306 atgtgatgtgaaatta 321  Q
    ||||||||||||||||    
T  19258757 atgtgatgtgaaatta 19258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 2509028 - 2509147
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| |||||||||  ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 2509127  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  2509128 tgatatgatgtaaaattact 2509147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 34307325 - 34307206
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| |||| || |||| ||||||    
T  34307325 tcttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtga 34307226  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  34307225 tgatatgatgtaaaattact 34307206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 39250050 - 39249931
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||| || ||     
T  39250050 tcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgg 39249951  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| | |||| ||||||||    
T  39249950 tgatataatgtaaaattact 39249931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 46901922 - 46901803
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| ||||||||||  |||||| |  ||||| |||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  46901922 tcttatacatgaaccaccttaggtgacatacaccattttacaccaacacatatttgtgacacgtggcaaaaacattaaaagaagagatgaaaaagggtga 46901823  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  46901822 tgatatgatgtaaaattact 46901803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 15495979 - 15496048
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 87  Q
    |||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||    
T  15495979 tcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccac 15496048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 28647392 - 28647474
Alignment:
Q  239 ttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 321  Q
    |||||| | |||||| |||||||| || ||||||||||||||||| || |||| |||||||||| ||||||||||||||||||    
T  28647392 ttttacacccacacatatttgtgatatttggcaaaaacattgaaagaatagatgaaaaggggtggtgatgtgatgtgaaatta 28647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 10494882 - 10494941
Alignment:
Q  31 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 90  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||||||||||| ||||||    
T  10494882 ccaccacgagcaccaacacaaaagacccaatatcaacaccaccatgaaaaccatcacaaa 10494941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 10146971 - 10147049
Alignment:
Q  205 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaa 283  Q
    |||||||||  |||| ||||| || ||||||| |||| || | |||||||| ||||||||||||||||||||| |||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 26842057 - 26842000
Alignment:
Q  22 caccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 79  Q
    |||||| || ||||||||||| || |||| |||||||||||||| |||||||||||||    
T  26842057 caccaaaaatcaccacgagcaccaccacaaaagacccagtatcaacaccaccatgaaa 26842000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 26236821 - 26236753
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 86  Q
    ||||||| || |||||||||||||| || |||| ||||| ||  |||||||||| ||||||||||||||    
T  26236821 tcaccactaaaaaccaccacgagcaccaccacaaaagactcaaaatcagcaccatcatgaaaaccacca 26236753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 2077419 - 2077379
Alignment:
Q  47 cacagaagacccagtatcagcaccaccatgaaaaccaccac 87  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  2077419 cacaaaagacccagtatcaacaccaccatggaaaccaccac 2077379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 8848987 - 8848923
Alignment:
Q  257 ttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 321  Q
    |||||||||||| |||||||||||||| |||||||   | |||||||   |||||||||||||||    
T  8848987 ttgtgacatgtgacaaaaacattgaaataagagatgggagggggtgagagtgtgatgtgaaatta 8848923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 9643009 - 9642933
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg-tgatgatgtgatgtgaaattact 323  Q
    |||||| | ||||||||  || |||||||| ||||| ||||||| | |||||| ||||||| |||||||||||||||    
T  9643009 cacacataattgtgacacatgacaaaaacaatgaaagaagagatgagaagggggtgatgatatgatgtgaaattact 9642933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 23980137 - 23980254
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 23980236  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||||||||||||||    
T  23980237 atgtgatgtgaaattact 23980254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 5811348 - 5811231
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| | ||| || ||||||  ||||| | | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 5811249  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||||||||||||||    
T  5811248 atgtgatgtgaaattact 5811231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 7700070 - 7699951
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700070 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7699971  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  7699970 tgatatgatataaaattact 7699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 7700268 - 7700149
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700268 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700169  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  7700168 tgatatgatataaaattact 7700149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 7700466 - 7700347
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700466 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700367  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  7700366 tgatatgatataaaattact 7700347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 7700664 - 7700545
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700664 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700565  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  7700564 tgatatgatataaaattact 7700545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 42221150 - 42221031
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || |||||||| |||||| | ||||||||||||||||| |||||||||||||||||| |||| || |||||||||||    
T  42221150 tcttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagatataaaaaggggtga 42221051  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  42221050 tgatatgatgttaaattact 42221031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 13108154 - 13108270
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| |||||  | ||||||| ||||||| | ||||||||||||||||||||||||||||| |||||| |||||| | |||||||||| |    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagaga-tgaaaggggtgagg 13108252  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||||||||||||||    
T  13108253 atgtgatgtgaaattact 13108270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 31148296 - 31148413
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||||  ||||||||||||||||| ||||||| |||| ||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatgaaaatgggtgatg 31148395  T
Q  306 atgtgatgtgaaattact 323  Q
    || |||||| ||||||||    
T  31148396 atatgatgtaaaattact 31148413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 28307682 - 28307563
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||| | ||||| || ||||||| ||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| ||||||    
T  28307682 tcttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 28307583  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  28307582 tgatatgatgtaaaattact 28307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 36346751 - 36346633
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| ||||  |||||    
T  36346751 tcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa-aggtga 36346653  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  36346652 tgatatgatgtaaaattact 36346633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 21807509 - 21807390
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||| |||||||||||| ||||||| ||||||| |||| || |||    
T  21807509 tcttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatga 21807410  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||||| |||||||||||||    
T  21807409 tgatgttatgtgaaattact 21807390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 26972390 - 26972271
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||  |||||| |||| ||||||    
T  26972390 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 26972291  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  26972290 tgatatgatgtaaaattact 26972271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 34108430 - 34108549
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| |||||||||| ||||||| | |||||| ||||||||||| || |||||||||||||  ||||||| |||| ||||||    
T  34108430 tcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtga 34108529  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  34108530 tgatatgatgtaaaattact 34108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 30887704 - 30887826
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||| ||||||| || ||||||| ||||||| | |||| |||||||||||| || ||||||||||||||  ||||||| |||| ||||||    
T  30887704 tcttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtga 30887803  T
Q  304 tgatgtgatgtgaaattacttaa 326  Q
    |||| |||||| |||||||||||    
T  30887804 tgatatgatgtaaaattacttaa 30887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 20086781 - 20086696
Alignment:
Q  238 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    ||||||| | |||| ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  20086781 cttttacacccacatacatttgagacatctggcaaaaacattaaaagaagagataaaaaggggtgatgatgtgatgtgaaattact 20086696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 46475075 - 46475147
Alignment:
Q  251 acacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  46475075 acacatttgtgacatgtaacaaaaacattgaaagaagagatgaaaaggggtgacgatgtgatgtgaaattact 46475147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 45782847 - 45782728
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| |||||  |||| || ||||||   |||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  45782847 tcttatacatcaaccactttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 45782748  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  45782747 tgatatgatgtaaaattact 45782728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 34828113 - 34828188
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||||||    
T  34828113 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtgatgatgatatgatgtaaaattact 34828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 38321014 - 38321132
Alignment:
Q  205 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 304  Q
    ||||||||| ||||||||||| || |||||||  ||| || | |||| ||| ||||||||||||||||||||||||||| |||| || | | | ||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagaggaggtgat 38321113  T
Q  305 gatgtgatgtgaaattact 323  Q
    | |||||||||||| ||||    
T  38321114 ggtgtgatgtgaaagtact 38321132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 15020288 - 15020402
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| | ||| || ||||||  ||||||| | ||||  |||||||||||| ||||||||||||||||| ||||||   |||||||||| |    
T  15020288 ttatacataaaccaccataggtggcatacaaccttttacacccaca--catttgtgacatatggcaaaaacattgaaagaagaga-cgaaaggggtgaag 15020384  T
Q  306 atgtgatgtgaaattact 323  Q
    || |||||||||||||||    
T  15020385 atatgatgtgaaattact 15020402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 42950156 - 42950113
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 291  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  42950156 cacacacatttgtgatatgtggcaaatacattgaaaaaagagat 42950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 21590583 - 21590510
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaa 91  Q
    |||||| ||| |||||||||||||  || |||| |||||||| |||||||||||||||  |||| |||||||||    
T  21590583 tcaccatcaaaaaccaccacgagccccaccacaaaagacccaatatcagcaccaccatagaaactaccacaaaa 21590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 14022940 - 14023057
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgacaaggggtgacg 14023039  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||||||||||||||    
T  14023040 atgtgatgtgaaattact 14023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 24208450 - 24208567
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||||| ||| ||  ||||||| |||||| | ||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||| |    
T  24208450 ttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaaaacattgaaagaagagatgaaaaagggtgagg 24208549  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||||||||||||||    
T  24208550 atgtgatgtgaaattact 24208567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 3987092 - 3986973
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||    
T  3987092 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagggatga 3986993  T
Q  304 tgatgtgatgtgaaattact 323  Q
    | || |||||| ||||||||    
T  3986992 taatatgatgtaaaattact 3986973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 13697573 - 13697691
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | || |||||||||||| | |||| ||||||||||||| ||||||| |||| ||||||    
T  13697573 tcttatacataaaccatcttagatgacatgcacccttttacac-catacacatttgtgatacgtggtaaaaacattgaaagaagagatgaaaacgggtga 13697671  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  13697672 tgatatgatataaaattact 13697691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 3118234 - 3118115
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    ||||||| || ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| |||| |||||     
T  3118234 tcttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagataaaaaagggtgg 3118135  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||  |||||| ||||||||    
T  3118134 tgacatgatgtaaaattact 3118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 15345844 - 15345727
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || |||| |||||||||| | || |||  ||||||||| |||||||||||||||||| || |||| ||||  |||||    
T  15345844 tcttatacatcaaccaccttaggtggcatatactcttttacacccataca--tttgtgacacgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 15345747  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  15345746 tgatatgatatcaaattact 15345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 206 - 319
Target Start/End: Complemental strand, 37914421 - 37914308
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||     
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 37914322  T
Q  306 atgtgatgtgaaat 319  Q
    ||||||||||||||    
T  37914321 atgtgatgtgaaat 37914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 36315565 - 36315680
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  36315565 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaagaggtga 36315664  T
Q  304 tgatgtgatgtgaaat 319  Q
    | ||||||||||||||    
T  36315665 taatgtgatgtgaaat 36315680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 44958117 - 44958236
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  44958117 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaagggtga 44958216  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  44958217 tgatatgatgtaaaattact 44958236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 33732573 - 33732692
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||     
T  33732573 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgg 33732672  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  33732673 tgatatgatgtaaaattact 33732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 37499052 - 37498931
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa--ggggt 301  Q
    ||||||| || ||||||||||  || ||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  37499052 tcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagagggt 37498953  T
Q  302 gatgatgtgatgtgaaattact 323  Q
    |||||| |||||| ||||||||    
T  37498952 gatgatatgatgtaaaattact 37498931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 3831081 - 3830965
Alignment:
Q  205 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 304  Q
    ||||||||| ||||| ||||| |||||||||| ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtggtgat 3830984  T
Q  305 gatgtgatgtgaaattact 323  Q
     || |||||| ||||||||    
T  3830983 tatctgatgtaaaattact 3830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 14572999 - 14573118
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| ||||| || ||| ||| |||||||   ||||||||||||||||| || ||||||||||||||| |||||||  ||| ||||||    
T  14572999 tcttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatggaaaagggtga 14573098  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  14573099 tgatatgatgtaaaattact 14573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 24137235 - 24137160
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  24137235 cacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagggatgaggatgtgatgtgaaattact 24137160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 6376418 - 6376306
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||     |||||||| ||||||| |||| |||||| |    
T  6376418 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc-----cattgaaagaagagatgaaaatgggtgagg 6376324  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||||||||||||||    
T  6376323 atgtgatgtgaaattact 6376306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 6705611 - 6705682
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 89  Q
    |||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||    
T  6705611 tcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccacaa 6705682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 16089826 - 16089944
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||  || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||  ||||     
T  16089826 tcttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagaga-taaaaaaggtgg 16089924  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  16089925 tgatatgatgtaaaattact 16089944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 40900295 - 40900367
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 90  Q
    |||||||||| | |||||||||||| || |||| ||||||||||||||||||||||||  |||||||||||||    
T  40900295 tcaccaccaaaagccaccacgagcaccaccacaaaagacccagtatcagcaccaccatagaaaccaccacaaa 40900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 41188824 - 41188892
Alignment:
Q  255 atttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    |||| |||||||||||||||||||||||||| || || ||||||| |||||||||||||| ||||||||    
T  41188824 atttatgacatgtggcaaaaacattgaaaaatgatatgaaaagggatgatgatgtgatgtaaaattact 41188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 38531350 - 38531278
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 90  Q
    ||||| |||| || ||||||||||| || |||| || |||||||||||||||||||||| ||| |||||||||    
T  38531350 tcaccgccaaaaatcaccacgagcaccaccacaaaaaacccagtatcagcaccaccatggaaaacaccacaaa 38531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 34660240 - 34660303
Alignment:
Q  19 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 82  Q
    ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  34660240 caccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 34660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 17282114 - 17282046
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 86  Q
    |||||||||| ||||||||||||   |  |||| ||||||||  ||||||||||||| |||||||||||    
T  17282114 tcaccaccaaaaaccaccacgagtcccgccacaaaagacccaaaatcagcaccaccaagaaaaccacca 17282046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 30432343 - 30432462
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| |||||||| ||||||| ||||||  | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  30432343 tcttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 30432442  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  30432443 tgatatgatgtaaaattact 30432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 12665348 - 12665468
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat-taaaaggggtg 302  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||  |||| |||||    
T  12665348 tcttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagataaaaaaagggtg 12665447  T
Q  303 atgatgtgatgtgaaattact 323  Q
    ||||| |||||| ||||||||    
T  12665448 atgatatgatgtaaaattact 12665468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 42162602 - 42162721
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | || |||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  42162602 tcttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 42162701  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  42162702 tgatatgatgtaaaattact 42162721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 44081784 - 44081903
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||| ||| |||| ||||||||||||| ||||||| |||| ||||||    
T  44081784 tcttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtga 44081883  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| | |||| ||||||||    
T  44081884 tgatataatgtaaaattact 44081903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 33726017 - 33726135
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaag-gggtgat 304  Q
    ||||||||||||||  |||| || |||||||  |||||| | |||| ||||||||||||||||||||||||||||||| ||||||| ||||| || |||     
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaagtggatgac 33726116  T
Q  305 gatgtgatgtgaaattact 323  Q
    |||||||||||||||||||    
T  33726117 gatgtgatgtgaaattact 33726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 36189220 - 36189337
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | |||| |||||||||||| |||||||||| ||||||| ||||||| |||||| ||||    
T  36189220 tcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaggagtga 36189319  T
Q  304 tgatgtgatgtgaaatta 321  Q
    |||| |||| | ||||||    
T  36189320 tgatatgatataaaatta 36189337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 31318853 - 31318928
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |||||| ||||||||    
T  31318853 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattact 31318928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 10203668 - 10203787
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| |||||||||  |||||||   ||||||||||||||||| ||| |||||| ||||||| ||||||| |||| |||||     
T  10203668 tcttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaagggtgg 10203767  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  10203768 tgatatgatataaaattact 10203787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 18184557 - 18184676
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    ||||||| || ||||| ||||  |||||||||| |||||||   |||||| |||||||||| ||||  |||||||||||  ||||||| |||||||||||    
T  18184557 tcttatatatgaaccaccttaagtgacatacacccttttacatccacacatatttgtgacacgtggtgaaaacattgaatgaagagatgaaaaggggtga 18184656  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  18184657 tgatatgatataaaattact 18184676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 43186031 - 43186150
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| |||||  |||| || |||| |||||||||| |   ||||||||||||| |||||||||||||||||||| || |||| ||||  |||||    
T  43186031 tcttatacatcaaccactttaggtggcatatactcttttacacctgcacacatttgtgatatgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 43186130  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||| | ||||||||    
T  43186131 tgatatgatataaaattact 43186150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 38845165 - 38845091
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    |||||||| ||||||||||||| ||||| ||||||| || |||| || |||||||||||||||||| |||||||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagat-aagaggggtgatgatgtgatgagaaattact 38845091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15050139 - 15050070
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 87  Q
    |||||||||| |||||||||||||| || |||| |||||| |||| ||||||||||||  ||||||||||    
T  15050139 tcaccaccaaaaaccaccacgagcaccaccacaaaagacctagtaccagcaccaccattgaaaccaccac 15050070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 31622 - 31547
Alignment:
Q  216 accatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 291  Q
    |||||||||| |  ||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| |||||||    
T  31622 accatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaagagat 31547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 42668951 - 42668850
Alignment:
Q  221 cttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 320  Q
    ||||| || ||||||| |||| || | |||||||| |||||||| |||||||||||||| ||| |||| | | | || ||||||| | ||||||||||||    
T  42668951 cttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaagata-tgagagaggtgatggtatgatgtgaaatt 42668853  T
Q  321 act 323  Q
    |||    
T  42668852 act 42668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 6443990 - 6444057
Alignment:
Q  19 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 87  Q
    ||||||||| ||||||  |||||| || |||| ||||||||  |||||| |||||||||||||||||||    
T  6443990 caccaccaa-aaccacttcgagcaccaccacaaaagacccaaaatcagccccaccatgaaaaccaccac 6444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 1815803 - 1815684
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||||||||| |||||||||| |||||||   |||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  1815803 tcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 1815704  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  1815703 tgatatgatgtaaaattact 1815684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 40888129 - 40888010
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  40888129 tcttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 40888030  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  40888029 tgatatgatgtaaaattact 40888010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 9408226 - 9408107
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| || || |||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  9408226 tcttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 9408127  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  9408126 tgatatgatgtaaaattact 9408107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 39370931 - 39371050
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  39370931 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtga 39371030  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  39371031 tgatatgatgtaaaattact 39371050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 2237282 - 2237399
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||| ||||| ||||| |||||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 2237381  T
Q  306 atgtgatgtgaaattact 323  Q
    || |||||| ||||||||    
T  2237382 atatgatgtaaaattact 2237399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 17225352 - 17225440
Alignment:
Q  235 actcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  17225352 actcttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagaggtgatgatgtgatgtgaaattact 17225440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 4300730 - 4300613
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| |||||| |||| ||||||| |  ||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||| ||||  ||||     
T  4300730 tcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaaaacattgaaataagagataaaaaatggtgg 4300631  T
Q  304 tgatgtgatgtgaaatta 321  Q
    ||||||||||||||||||    
T  4300630 tgatgtgatgtgaaatta 4300613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 14831559 - 14831665
Alignment:
Q  215 aaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgt 314  Q
    ||||| ||||| || ||||||| ||||||| | ||||||||||||||| | |||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  14831559 aaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgt 14831658  T
Q  315 gaaatta 321  Q
     ||||||    
T  14831659 aaaatta 14831665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 13347134 - 13347251
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| || |||| |||| | ||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaatagatgaaaaagagtgatg 13347233  T
Q  306 atgtgatgtgaaattact 323  Q
    || ||||||  |||||||    
T  13347234 atatgatgtataattact 13347251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 33404623 - 33404531
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 296  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  33404623 tcttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 33404531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 41004031 - 41003918
Alignment:
Q  209 tacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatg 308  Q
    ||||| |||||  |||| || ||||||| ||||||| |||| |||||||| |||||||||||||||| |||| ||||||| || ||||||| ||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaaaatattg-aaaaagatataaaaagggatgatgatg 41003933  T
Q  309 tgatgtgaaattact 323  Q
    |||||| ||||||||    
T  41003932 tgatgtaaaattact 41003918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 27553560 - 27553441
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| |||||| |||| || |||| ||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||  ||||  |||||    
T  27553560 tcttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagaagaaaaatggtga 27553461  T
Q  304 tgatgtgatgtgaaattact 323  Q
    | || |||||| ||||||||    
T  27553460 ttatctgatgtaaaattact 27553441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 31800596 - 31800681
Alignment:
Q  238 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 323  Q
    ||||||| | ||||||||||| ||||| |||||||||| ||||||| || |||| ||||||||||||||| |||||| ||||||||    
T  31800596 cttttacacccacacacatttatgacacgtggcaaaaatattgaaagaaaagatgaaaaggggtgatgatatgatgtaaaattact 31800681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 12164255 - 12164339
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 288  Q
    |||||||||| ||||||||||| || || ||| ||||| |  |||||||||| ||||| ||||||||||||||||||||| ||||    
T  12164255 tcttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaaaacattgaaagaaga 12164339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 19596252 - 19596169
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagag 289  Q
    |||||||| ||||| ||||| || |||||||  ||||||   ||| |||||||||||||||||||||||||||||||| |||||    
T  19596252 ttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggcaaaaacattgaaagaagag 19596169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 40599944 - 40599887
Alignment:
Q  30 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 87  Q
    ||||||||||||| || |||| |||||| ||||||| ||||||| |||||||||||||    
T  40599944 accaccacgagcaccaccacaaaagacctagtatcaacaccaccgtgaaaaccaccac 40599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7271788 - 7271851
Alignment:
Q  19 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 82  Q
    ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  7271788 caccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 7271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 19124657 - 19124540
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    ||||||||||  || |||||||||| |||||||  ||| || | |||||||| ||||||| ||||||||||||||| ||| ||||||| |||    ||||    
T  19124657 tcttatacatggactatcttagatggcatacaca-tttgacacccacacacaattgtgacgtgtggcaaaaacatt-aaagaagagatgaaagaatgtga 19124560  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  19124559 tgatatgatgtaaaattact 19124540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 24867148 - 24867100
Alignment:
Q  17 ctcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 65  Q
    ||||||||||| |||||||||||||| || || | ||||||||||||||    
T  24867148 ctcaccaccaaaaaccaccacgagcaccaccataaaagacccagtatca 24867100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 45829444 - 45829329
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| |||||  |||| ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  45829444 tcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 45829345  T
Q  304 tgatgtgatgtgaaat 319  Q
    | ||||||||||||||    
T  45829344 taatgtgatgtgaaat 45829329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 46192363 - 46192478
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| || || ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  46192363 tcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 46192462  T
Q  304 tgatgtgatgtgaaat 319  Q
    | ||||||||||||||    
T  46192463 taatgtgatgtgaaat 46192478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 44275710 - 44275829
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| ||||| || |||| ||  |||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||    
T  44275710 tcttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaaaatattgaaagaagagattaaaaagggtga 44275809  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  44275810 tgatatgatgtaaaattact 44275829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 3672278 - 3672397
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  3672278 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 3672377  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| ||||||  |||||||    
T  3672378 tgatatgatgtataattact 3672397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 6112634 - 6112753
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  6112634 tcttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 6112733  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  6112734 tgatatgatgtaaaattact 6112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 7217769 - 7217888
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| ||||| || ||||||| |||| || |  |||||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  7217769 tcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagataaaaaagggtga 7217868  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  7217869 tgatatgatgtaaaattact 7217888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 28093283 - 28093164
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||  |||||| |||| ||||||    
T  28093283 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 28093184  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||| ||||    
T  28093183 tgatatgatgtaaaaatact 28093164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 49243819 - 49243938
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  49243819 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaaaagtga 49243918  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  49243919 tgatatgatgtaaaattact 49243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 21391142 - 21391023
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| | ||||    
T  21391142 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaatgagtga 21391043  T
Q  304 tgatgtgatgtgaaattact 323  Q
      || |||||| ||||||||    
T  21391042 atatatgatgtaaaattact 21391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 35544916 - 35545035
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||||||||| ||  ||||||  ||||||   |||| |||||||||| | |||||||||||||||||| |||| || |||||||||||    
T  35544916 tcttatacatgaaccatcttaggtggtatacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaagatataaaaaggggtga 35545015  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  35545016 tgatatgatgtaaaattact 35545035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 51038811 - 51038887
Alignment:
Q  248 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa-ggggtgatgatgtgatgtgaaattact 323  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||    
T  51038811 cacacacaattgtgacatgtgacaaaaacattgaaagaagagatgaaaagggggtgatggtgtgatgtgaaattact 51038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 45873212 - 45873280
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 86  Q
    |||||||||| ||||||||||| || || |||| |||||||| ||| | ||||||||||||||||||||    
T  45873212 tcaccaccaaaaaccaccacgaacaccaccacaaaagacccaatattaacaccaccatgaaaaccacca 45873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 43245522 - 43245562
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttac 244  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttac 43245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 54849793 - 54849909
Alignment:
Q  205 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 304  Q
    ||||||||| ||||| |||||||  | ||||| |||| |  | ||||| || |||||||| ||| |||||| ||||||| ||||||| | |  || ||||    
T  54849793 cttatacatgaaccaccttagatagcgtacacactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgat 54849892  T
Q  305 gatgtgatgtgaaatta 321  Q
    |||||||||||||||||    
T  54849893 gatgtgatgtgaaatta 54849909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 47518620 - 47518552
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 86  Q
    |||||||||| ||||||||||||| | | |||| |||| |||  ||||||| ||||| |||||||||||    
T  47518620 tcaccaccaaaaaccaccacgagccttaccacaaaagatccaaaatcagcaacaccaagaaaaccacca 47518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 46112131 - 46112012
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||||||||| ||||||||||  ||||||   |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  46112131 tcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtga 46112032  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  46112031 tgatatgatgtaaaattact 46112012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 21559565 - 21559684
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| |||| |    
T  21559565 tcttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaagggtaa 21559664  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  21559665 tgatatgatgtaaaattact 21559684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 36749410 - 36749529
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  36749410 tcttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 36749509  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  36749510 tgatatgatgtaaaattact 36749529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 39467286 - 39467169
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||||| |||||||||||||| |||||| ||||||| ||||||| ||||||||||| |    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatgaaaaggggtgagg 39467187  T
Q  306 atgtgatgtgaaattact 323  Q
    ||||||| ||||||||||    
T  39467186 atgtgatatgaaattact 39467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 34750085 - 34749966
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  34750085 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 34749986  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  34749985 tgatatgatgtaaaattact 34749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 36370525 - 36370406
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  36370525 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtga 36370426  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  36370425 tgatatgatgtaaaattact 36370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 43999993 - 44000112
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  43999993 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 44000092  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  44000093 tgatatgatgtaaaattact 44000112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 39072458 - 39072350
Alignment:
Q  206 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 305  Q
    |||||||| || || |||||||||||||||| ||||||| | |||| ||||||||||||||||||| ||||||| ||| ||||||| |||| ||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggcataaacattaaaagaagagatgaaaatgggtgatg 39072359  T
Q  306 atgtgatgt 314  Q
    |||||||||    
T  39072358 atgtgatgt 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 22894684 - 22894803
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  22894684 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 22894783  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| ||||||  |||||||    
T  22894784 tgatatgatgtataattact 22894803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 51339968 - 51339851
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||||||||| ||||| || ||||||  ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  51339968 tcttatacataaaccaccttaggtggcatacatccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 51339871  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  51339870 tgatatgatgtaaaattact 51339851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 30735682 - 30735564
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    ||||||| || ||||| |||||||| ||||||| ||||||| | ||||||||| ||||||| |||||||||||||||||| |||| | ||||| ||||||    
T  30735682 tcttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaagata-taaaaagggtga 30735584  T
Q  304 tgatgtgatgtgaaattact 323  Q
    |||| |||||| ||||||||    
T  30735583 tgatatgatgttaaattact 30735564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 29460664 - 29460756
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 296  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29460664 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29460756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 29471516 - 29471608
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 296  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29471516 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 38231297 - 38231381
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 288  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  38231297 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaaga 38231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 37067076 - 37067129
Alignment:
Q  150 accccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcgg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37067076 accccaaccataattcttgcaaagtaacccatgttttgtagctccagctggcgg 37067129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 20856334 - 20856221
Alignment:
Q  208 atacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgat 307  Q
    |||||| |||||  |||| || ||||||| ||||||| | || ||||||||||||||||||||||||||||||| |||||| | ||||| || |||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattga-aaaagata-taaaaaggatgatgat 20856237  T
Q  308 gtgatgtgaaattact 323  Q
    ||||| | ||||||||    
T  20856236 gtgatataaaattact 20856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 320
Target Start/End: Original strand, 53638165 - 53638255
Alignment:
Q  230 catacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 320  Q
    ||||||| |||| || | |||||||| | ||||||||||| |||||||| |||| ||||||| | | |||||||||||||||||| |||||    
T  53638165 catacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgtgatgtaaaatt 53638255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 31699315 - 31699373
Alignment:
Q  31 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 89  Q
    |||||||||||| || |||| |||||||| || || |||||||||| ||||||||||||    
T  31699315 ccaccacgagcaccaccacaaaagacccaataccaacaccaccatggaaaccaccacaa 31699373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 29820483 - 29820390
Alignment:
Q  207 tatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg 300  Q
    |||||||| |||| ||||| || ||||||| |||| || | |||| ||| |||||| |||| ||||||||||| ||| ||||||| | ||||||    
T  29820483 tatacatagaccaccttaggtggcatacacactttgacacccacatacaattgtgagatgtagcaaaaacattaaaagaagagatgagaagggg 29820390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 18269863 - 18269807
Alignment:
Q  30 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 86  Q
    ||||||||||||  || |||| ||||||||  |||| ||||||||||||||||||||    
T  18269863 accaccacgagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccacca 18269807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 6722 - 6844
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 303  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 6821  T
Q  304 tgatgtgatgtgaaattacttaa 326  Q
    |||| |||||| |||||||||||    
T  6822 tgatatgatgtaaaattacttaa 6844  T

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Target: scaffold0092 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 23276 - 23348
Alignment:
Q  18 tcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 90  Q
    |||| ||||| |||||||||||||| || |||| |||||| |||||||||||||||||| |||||||||||||    
T  23276 tcacaaccaaaaaccaccacgagcaccaccacaaaagacctagtatcagcaccaccatggaaaccaccacaaa 23348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 87350 - 87259
Alignment:
Q  204 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 296  Q
    |||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacac-cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 87259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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