View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_5 (Length: 477)
Name: NF17342_low_5
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 9417937 - 9418200
Alignment:
| Q |
1 |
tcgttgacccttgtctttcctctcccaactggactgggacgtggttgcaaatatggattggtaacaggtatctttgatctgtgagatggactttgaaata |
100 |
Q |
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| T |
9417937 |
tcgttgacccttgtctttcctctcccaactggactgggacgtggttgcaaatatggattggtaacaggtatctttgatctgtgagatggactttgaaata |
9418036 |
T |
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| Q |
101 |
actttttagttatcccagtcaatacagcactaccaataggctacaaggtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacat |
200 |
Q |
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| T |
9418037 |
actttttagttatcccagtcaatacagcactaccaataggctacaaggtttataaaaaattgttagttaaacatgtcacttttcaattaagaaaaaacat |
9418136 |
T |
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| Q |
201 |
gttaaaattattattacctctgagttggatgaccttctaaagttgctcttccaaagcatcatag |
264 |
Q |
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| T |
9418137 |
gttaaaattattattacctctgagttggatgaccttctaaagttgctcttccaaagcatcatag |
9418200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 12003644 - 12003378
Alignment:
| Q |
1 |
tcgttgacccttgtctttcctctcccaactggactgggacgtggttgcaaatatggattggtaacaggtatctttgatctgtgagatggactttgaaata |
100 |
Q |
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| T |
12003644 |
tcgttgacccttgtctttcctctcccaactggactgggacgtggttgcaaatatggattggtaacatgtatctttgatctgtgagatggactttgaaata |
12003545 |
T |
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| Q |
101 |
actttttagttatcccagtcaatacagcactaccaataggctacaaggtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacat |
200 |
Q |
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| T |
12003544 |
actttttagttatcctagtcaatacagcactaccaataggctacaaggtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacat |
12003445 |
T |
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| Q |
201 |
gttaaaattattattacctctgagttggatgaccttctaaagttgctcttccaaagcatcatagcaga |
268 |
Q |
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| T |
12003444 |
gtt-aaattattattacctctgagttggatgaccttctaaagttgctcttgcaaagcatcatagcaga |
12003378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 261 - 460
Target Start/End: Complemental strand, 12002139 - 12001940
Alignment:
| Q |
261 |
atagcagaagtgttgtccttaacacctgatttttcacctgtggtccactcttttgggagaggtggtttcatttcaaacatagtgttgttatacattccat |
360 |
Q |
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| T |
12002139 |
atagcaaaagtgttgtccttaacacctgatttttcacctgtggtccactcttttaggagaggtggtttcattccaaatatagtgttattatacattccat |
12002040 |
T |
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| Q |
361 |
tcattgctgacctatgcattttctttccttttgtgtcatcatcactgtcagacacatccacaataacattgttaaagtcatcaatgatttctgttgcctt |
460 |
Q |
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| T |
12002039 |
tcatcactgacctatgcactttctttccttttgtgtcatcatcaccgtcagacacatccacaataacattgttaaagtcatcaatgatttttgttgcctt |
12001940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 17813413 - 17813854
Alignment:
| Q |
1 |
tcgttgacccttgtctttcctctcccaactggactgggacgtggttgcaaatatggattggtaacaggtatctttgatctgtgagatggactttgaaata |
100 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
17813413 |
tcgttgacccttgtctttcctctcccaaataaactgcaacgtggttgcatatatggattggtaacaggtatccttgatatgtgagatggactttgaaata |
17813512 |
T |
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| Q |
101 |
actttttagttatcccagtcaatacagcactaccaataggctacaaggtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacat |
200 |
Q |
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| T |
17813513 |
actttttagttatcccagtcaatccagtactgccaataggctacaaggattat-aaagatcgttaattaaacatatcacttttcaagtaagaaaaaacac |
17813611 |
T |
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| Q |
201 |
gttaaaattattattacctctgagttggatgaccttctaaagttgctcttccaaagcatcatagcagaagtgttgtccttaacacctgatttttcacctg |
300 |
Q |
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| T |
17813612 |
gttaaaataattattacctctgagttggatgaccttat-aagttgctcttgcaaaacatcatagcaaaatcgttgtccttaa------------cacctg |
17813698 |
T |
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| Q |
301 |
tggtccactcttttgggagaggtggtttcatttcaaacatagtgttgttatacattccattcattgctgacctatgcattttctttccttttgtgtcatc |
400 |
Q |
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|| ||||||||||| |||||| |||||||||| |||| ||| ||||| |||||||||||||| |||||||||||| ||||||| |||||||||||| |
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| T |
17813699 |
tgttccactcttttaggagagttggtttcattccaaatataatgttgccatacattccattcaacactgacctatgcactttcttttcttttgtgtcatt |
17813798 |
T |
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| Q |
401 |
atcactgtcagacacatccacaataacattgttaaagtcatcaatgatttctgttg |
456 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
17813799 |
atcattgtcagacacatccacaataacattgttaaggtcatcaaagatttatgttg |
17813854 |
T |
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