View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_7 (Length: 394)
Name: NF17342_low_7
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 306
Target Start/End: Complemental strand, 31334210 - 31334050
Alignment:
| Q |
148 |
ggaaaatgctagttctcccgataaaaaacatagcgacaaattccacgaatgattttt-acaccaaatataattatct-atttacatcaataccctcccat |
245 |
Q |
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|||||||||||||| |||||||| || |||| | ||||| ||| || |||| ||||| |||| |||||||||||||| | |||||||||| ||||||||| |
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| T |
31334210 |
ggaaaatgctagttatcccgatagaatacattgtgacaa-ttctacaaatggttttttacactaaatataattatcttaattacatcaattccctcccat |
31334112 |
T |
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| Q |
246 |
gttttccgccaaaaacattgttacttggctat-aagcatgtcctgatgctttcgggaaaatt |
306 |
Q |
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| T |
31334111 |
gttttccgccaaaaacattgttacttggctataaagcatgtcgtgatgctttcgggaaaatt |
31334050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 25619638 - 25619512
Alignment:
| Q |
182 |
gacaaattccacgaatgattttt-acaccaaatataattatct-atttacatcaataccctcccatgttttccgccaaaaacattgttacttggctataa |
279 |
Q |
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||||||||||||||||||||||| |||| ||| ||| |||||| | ||||| |||| |||||| |||||||||||||||||||||||||||||||| | | |
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| T |
25619638 |
gacaaattccacgaatgattttttacactaaacatatttatcttaattacaccaattccctccgatgttttccgccaaaaacattgttacttggctttta |
25619539 |
T |
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| Q |
280 |
gcatgtcctgatgctttcgggaaaatt |
306 |
Q |
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| T |
25619538 |
ccatgtcgtgatgatttcgggaaaatt |
25619512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 35292919 - 35292998
Alignment:
| Q |
227 |
tacatcaataccctcccatgttttccgccaaaaacattgttacttggctataagcatgtcctgatgctttcgggaaaatt |
306 |
Q |
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| T |
35292919 |
tacatcattaccctaccatgttttccgccaaaaacactgttacttggctataagcatggcgtgatgctttcgggaaaatt |
35292998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 10064135 - 10064020
Alignment:
| Q |
156 |
ctagttctcccgataaaaaacatagcgacaaattccacgaatg-atttttacaccaaatataattatc-tatttacatcaataccctcccatgttttccg |
253 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||| |||||| || || ||| |||||||||||||| ||||||| |
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| T |
10064135 |
ctagttctcccgatagaaaacatagcgacaagttccacgaatgaatttttacactaaacataattgtcttaatta---caataccctcccatattttccg |
10064039 |
T |
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| Q |
254 |
ccaaaaacattgttacttg |
272 |
Q |
| |
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| T |
10064038 |
ccaaaaacactgttacttg |
10064020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 34661696 - 34661797
Alignment:
| Q |
146 |
aaggaaaatgctagttctcccgataaaaaacatagcgacaaattccacgaatgat-ttttacaccaaatataattatc-tatttacatcaataccctccc |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| || |||| |||||||| ||| ||||||||| || ||||||||||||||||| |
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| T |
34661696 |
aaggaaaatgctagttctcccgatagaaaacatagccacaaat-----gattgatattttacactaaacataattatcttaattacatcaataccctccg |
34661790 |
T |
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| Q |
244 |
atgtttt |
250 |
Q |
| |
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||||||| |
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|
| T |
34661791 |
atgtttt |
34661797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 2473237 - 2473289
Alignment:
| Q |
200 |
tttttacaccaaatataattatct-atttacatcaataccctcccatgttttc |
251 |
Q |
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||||||||| |||||||||| ||| | |||||||||||||||||| ||||||| |
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| T |
2473237 |
tttttacactaaatataattttcttaattacatcaataccctcccttgttttc |
2473289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 16838474 - 16838442
Alignment:
| Q |
75 |
ggttgttaggatggaatgttccttattctcaat |
107 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
16838474 |
ggttgttaggatggaatgttccatattctcaat |
16838442 |
T |
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