View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17342_low_9 (Length: 353)
Name: NF17342_low_9
Description: NF17342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17342_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 14738368 - 14738060
Alignment:
| Q |
18 |
agtaagaacaaaaataagaagctccattttctgatgaaacaagaatagtgnnnnnnnngtactaaaagaagagtttgtgtctnnnnnnnnatacagagta |
117 |
Q |
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| T |
14738368 |
agtaagaacaaaaataagaagctccattttctgatgaaacaagaatagtggaaaaa--gtactaaaagaagagcttgtgcttgggg----atacagatta |
14738275 |
T |
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| Q |
118 |
--ggataacattggatgatgcatcatgggttttgtgtttgacacctgtcatgtaaccaatggtgnnnnnnnnnnnatcaaatataatctatggcttataa |
215 |
Q |
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| T |
14738274 |
taggataacattggatgatgcatcatgggttt-------gacacctgtcatgtaacctatggtgtttttatt---atcaaatataatctatggct-atga |
14738186 |
T |
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| Q |
216 |
tttgcaaagcattgagacactattagctgcaatgctccaagggatggtccctnnnnnnnnntgtttcgaagtgatgggataagataatgtcacgctcttt |
315 |
Q |
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| T |
14738185 |
tttgcaaagcattgagacactattagctgcaatgctccaagggatggtccct-aaaaaaaatg-ttcgaagtgatgggataagataatgtcacgctcttt |
14738088 |
T |
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| Q |
316 |
taatgactagattcacatgccagtatta |
343 |
Q |
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| T |
14738087 |
taatgactagattcacatgccagtatta |
14738060 |
T |
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