View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17343_high_13 (Length: 416)

Name: NF17343_high_13
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17343_high_13
NF17343_high_13
[»] chr8 (18 HSPs)
chr8 (19-406)||(6275330-6275717)
chr8 (207-406)||(6322197-6322396)
chr8 (227-408)||(6332779-6332960)
chr8 (253-398)||(6353181-6353326)
chr8 (209-406)||(6363969-6364168)
chr8 (19-91)||(6322506-6322578)
chr8 (20-89)||(6425181-6425250)
chr8 (40-117)||(6290371-6290448)
chr8 (220-344)||(6424909-6425033)
chr8 (220-341)||(6289818-6289939)
chr8 (220-324)||(7460153-7460257)
chr8 (20-87)||(6333077-6333144)
chr8 (36-89)||(7460563-7460616)
chr8 (259-324)||(7471729-7471794)
chr8 (20-91)||(6364362-6364433)
chr8 (35-73)||(6392003-6392041)
chr8 (35-73)||(6411167-6411205)
chr8 (252-305)||(6451892-6451945)
[»] chr2 (1 HSPs)
chr2 (220-337)||(42694042-42694159)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 6275717 - 6275330
Alignment:
Q  19 attggaggatccaacaccttgccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggttatatgcttttatattctatttaaacacttt 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6275717 attggaggatccaacaccttgccttaccctcgaagagggagaaccggcaggaaaccagctaagaaaggttatatgcttttatattttatttaaacacttt 6275618  T
Q  119 atgtatgttatatcttaagtatgttgatccaaattttcatttgtttatgattctaagacattcctcttgctaatgcatattttgctatttttgtatttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275617 atgtatgttatatcttaagtatgttgatccaaattttcatttgtttatgattctaagacattcctcttgctaatgcatattttgctatttttgtatttgt 6275518  T
Q  219 gcagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275517 gcagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactca 6275418  T
Q  319 aatcagtatctcaaaatgtcatacctcaattacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275417 aatcagtatctcaaaatgtcatacctcaattacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgt 6275330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 207 - 406
Target Start/End: Complemental strand, 6322396 - 6322197
Alignment:
Q  207 ttttgtatttgtgcagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttg 306  Q
    |||||||| ||  |||||||||||||||||||||||  ||| | | ||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  6322396 ttttgtatgtgaacagatcctaaaagtgagagacgggacgactttgtttacgttccaagagatgaagcatttggtcacttgaagtcttcagattttcttg 6322297  T
Q  307 tttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgt 406  Q
    ||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  6322296 tttacatactcaaatcagcttctcaaagtttcatacctcaattacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgt 6322197  T

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Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 227 - 408
Target Start/End: Complemental strand, 6332960 - 6332779
Alignment:
Q  227 taaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagta 326  Q
    |||||||||||| |||||||| | | ||||  |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| |    
T  6332960 taaaagtgagagtcggagcgactttgtttacattccaagagatgaatcatttggccacttgaagtcttcagactttcttgtttatatactgaaatcagca 6332861  T
Q  327 tctcaaaatgtcatacctcaattacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgtcc 408  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||  ||||| |||||||    
T  6332860 tctcaaaatgttatacctcaattacgatctgcacttacattacaattcaatcagccagagtttaacacttttgaagatgtcc 6332779  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 253 - 398
Target Start/End: Complemental strand, 6353326 - 6353181
Alignment:
Q  253 tttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcagtatctcaaaatgtcatacctcaattaca 352  Q
    |||| ||||||||||||||||| ||||| |||   ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |       
T  6353326 tttaccttccaagagatgaatcttttggacacacaaagtcatcagactttcttgtttacatactcaaatcagcatctcaaaatgtcatacctcaactgag 6353227  T
Q  353 atctgcaattacattacaattcaataagccagaatttaacagcttt 398  Q
    ||||| | ||||||||||| ||||||| || || ||||||| ||||    
T  6353226 atctgtagttacattacaactcaataaccctgagtttaacaccttt 6353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 406
Target Start/End: Complemental strand, 6364168 - 6363969
Alignment:
Q  209 ttgtatttgtg--cagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttg 306  Q
    |||||||||||  |||||||||| |||||||| || || ||   | |||| || |||||||||||||||||||| |||   ||||| ||||| |||||||    
T  6364168 ttgtatttgtgaacagatcctaagagtgagagtcgaagtgacactgtttacctcccaagagatgaatcatttggacacacaaagtcatcagactttcttg 6364069  T
Q  307 tttacatactcaaatcagtatctcaaaatgtcatacctcaattacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgt 406  Q
    || ||||||||||||| | |||||||||||||||||||| ||||  ||||  | |||||||||||||| || |||| || ||||||| |||||| |||||    
T  6364068 ttcacatactcaaatctgcatctcaaaatgtcatacctcgattaagatctatagttacattacaattccatgagcctgagtttaacacctttgaagatgt 6363969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 6322578 - 6322506
Alignment:
Q  19 attggaggatccaacaccttgccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggttata 91  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  6322578 attggaggatccgacaccttgccttaccctcgaaggggcagaaccggcaggaaaccagctaaaaaaggttata 6322506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 6425250 - 6425181
Alignment:
Q  20 ttggaggatccaacaccttgccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggtta 89  Q
    |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  6425250 ttggaggatcgagcaccttgccttaccctcgaagggggagaacaggcagaaaaccagctaaaaaaggtta 6425181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 6290448 - 6290371
Alignment:
Q  40 ccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggttatatgcttttatattctatttaaacactt 117  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||  |||||||| ||| |||||||||||    
T  6290448 ccttaccctcgaaggggaagaaccggcagggaaccagctaagaaaggttataaacttttatactctttttaaacactt 6290371  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 6425033 - 6424909
Alignment:
Q  220 cagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaa 319  Q
    |||||||||| |||||||| |||||||    | |||| ||||||||||||||  ||||||| |||   ||||||||||| ||||||| || |||||||||    
T  6425033 cagatcctaagagtgagagtcggagcggcactgtttaccttccaagagatgaggcatttggacacacaaagtcttcagactttcttgctttcatactcaa 6424934  T
Q  320 atcagtatctcaaaatgtcatacct 344  Q
    ||||| |||||||||| ||||||||    
T  6424933 atcagcatctcaaaatatcatacct 6424909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 6289939 - 6289818
Alignment:
Q  220 cagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaa 319  Q
    ||||||||||||||||||| |||| ||  | | ||||  ||||||||||||||||||||| ||||  |||||||||||| ||||||| | || |||| ||    
T  6289939 cagatcctaaaagtgagagtcggaacggctttgtttacattccaagagatgaatcatttgatcacaagaagtcttcagaatttcttgataacctactgaa 6289840  T
Q  320 atcagtatctcaaaatgtcata 341  Q
    ||||| ||||||| || |||||    
T  6289839 atcagcatctcaagatttcata 6289818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 7460257 - 7460153
Alignment:
Q  220 cagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaa 319  Q
    |||||||||| |||||||| || || ||   ||||||  |||||||||||||||||||||||||||||||||| || || ||||||| |||  |||||||    
T  7460257 cagatcctaagagtgagagtcgaagtgacgctatttacgttccaagagatgaatcatttggtcacttgaagtcatctgactttcttggttatgtactcaa 7460158  T
Q  320 atcag 324  Q
    |||||    
T  7460157 atcag 7460153  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 6333144 - 6333077
Alignment:
Q  20 ttggaggatccaacaccttgccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggt 87  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  6333144 ttggaggatccaataacttgccttaccctcgaagggggagaaccggcaggaaacatgctaaaaaaggt 6333077  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 7460616 - 7460563
Alignment:
Q  36 cttgccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggtta 89  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  7460616 cttgccttaccctcgaaggggaagaaccggcagaaaaccatctaaaaaaggtta 7460563  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 7471794 - 7471729
Alignment:
Q  259 ttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaaatcag 324  Q
    |||||||||||||||||||||||||||||||||| || || ||||||| |||  ||||||||||||    
T  7471794 ttccaagagatgaatcatttggtcacttgaagtcatctgactttcttggttatgtactcaaatcag 7471729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 6364433 - 6364362
Alignment:
Q  20 ttggaggatccaacaccttgccttaccctcgaagggggagaaccggcagaaaaccagctaagaaaggttata 91  Q
    |||||||||| | |||| | |||||||||||||| |||||||||||||| ||| |||||   ||||||||||    
T  6364433 ttggaggatctagcaccctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttata 6364362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 6392041 - 6392003
Alignment:
Q  35 ccttgccttaccctcgaagggggagaaccggcagaaaac 73  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  6392041 ccttgccttaccctcgaaggggaagaactggcagaaaac 6392003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 6411205 - 6411167
Alignment:
Q  35 ccttgccttaccctcgaagggggagaaccggcagaaaac 73  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  6411205 ccttgccttaccctcgaaggggaagaactggcagaaaac 6411167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 6451945 - 6451892
Alignment:
Q  252 atttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttctt 305  Q
    |||||| ||||||||||||||   ||||||||||||||||| ||||| ||||||    
T  6451945 atttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttctt 6451892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 42694159 - 42694042
Alignment:
Q  220 cagatcctaaaagtgagagacggagcgagtatatttatcttccaagagatgaatcatttggtcacttgaagtcttcagattttcttgtttacatactcaa 319  Q
    |||||||||||||||||||  |||| || | | | |||||||||||||||||| | |||||||||||||| || ||||||||||||  |||   ||| ||    
T  42694159 cagatcctaaaagtgagagtaggagtgattttgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaa 42694060  T
Q  320 atcagtatctcaaaatgt 337  Q
    | ||||||||||||||||    
T  42694059 agcagtatctcaaaatgt 42694042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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