View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_16 (Length: 392)
Name: NF17343_high_16
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 14303925 - 14303547
Alignment:
| Q |
1 |
tcttacatttggagttgcaacttttatgaggattcctctgaatgctggcactgttttcacagtaacttcagtgatcaagatacttcaagagcctatgagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14303925 |
tcttacatttggagttgcaacttttatggggattcctctgaatgctggcactgttttcacagtaactgcagtgatcaagatacttcaagagcctatgagt |
14303826 |
T |
|
| Q |
101 |
acttttccacaggctcttatcaatatttcgcaagcaacaatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303825 |
acttttccacaggctcttatcaatatttcgcaagcaacgatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgc |
14303726 |
T |
|
| Q |
201 |
aaagagaggagaattgcgatggtgatgtagctgtggagataaaagatggggaattttcttgggatgatatggatgagaatgaggctttgcgagttaagga |
300 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303725 |
aaagagaggagaactgtaatggtgatgtagctgtggagataaaagatgggaaattttcttgggatgatatggatgagaatgaggctttgcgagttaagga |
14303626 |
T |
|
| Q |
301 |
attggtgattaagaaaggggaccatgctgctgctgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
379 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14303625 |
attggtgattaagaaaggggaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
14303547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 32 - 379
Target Start/End: Complemental strand, 14320285 - 14319938
Alignment:
| Q |
32 |
attcctctgaatgctggcactgttttcacagtaacttcagtgatcaagatacttcaagagcctatgagtacttttccacaggctcttatcaatatttcgc |
131 |
Q |
| |
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|||||| ||||||| |||||||| || ||| ||||||| | |||||||| |||||||||||| |||| ||||| || || |||||||| | ||||| | |
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| T |
14320285 |
attcctttgaatgccggcactgtatttacaataacttcgattatcaagattcttcaagagcctgtgaggactttcccgcaagctcttataatgatttctc |
14320186 |
T |
|
| Q |
132 |
aagcaacaatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgcaaagagaggagaattgcgatggtgatgtagc |
231 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14320185 |
aagcaacaatatctttagggaggttggatgagttcatggtgagtaaggaaatggatgagaatgcagtgcaaagagaggagaattgtgatggtgatgtagc |
14320086 |
T |
|
| Q |
232 |
tgtggagataaaagatggggaattttcttgggatgatatggatgagaatgaggctttgcgagttaaggaattggtgattaagaaaggggaccatgctgct |
331 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||| ||| | || ||||| |||||||||||||||| ||||||| |
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| T |
14320085 |
cgtggagataaaagatgggaaattttcatgggatgataaggatgagaatgaggcgttgacagtggaagagttggtaattaagaaaggggaccgtgctgct |
14319986 |
T |
|
| Q |
332 |
gctgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
379 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
14319985 |
attgtaggaactgttggttcaggcaagtcttcattattggcttctgtg |
14319938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 14282167 - 14281789
Alignment:
| Q |
1 |
tcttacatttggagttgcaacttttatgaggattcctctgaatgctggcactgttttcacagtaacttcagtgatcaagatacttcaagagcctatgagt |
100 |
Q |
| |
|
|||||| |||||| |||||||||||| | | |||| |||| || ||||| ||||| ||| ||||||| | |||||||| |||||||||||| |||| |
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| T |
14282167 |
tcttacctttggaactgcaacttttataggaactcctttgaaggccggcacagtttttacaataacttcgattatcaagattcttcaagagcctctgagg |
14282068 |
T |
|
| Q |
101 |
acttttccacaggctcttatcaatatttcgcaagcaacaatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgc |
200 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||| |||| |
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| T |
14282067 |
actttccctcaggctcttatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgc |
14281968 |
T |
|
| Q |
201 |
aaagagaggagaattgcgatggtgatgtagctgtggagataaaagatggggaattttcttgggatgatatggatgagaatgaggctttgcgagttaagga |
300 |
Q |
| |
|
||||||| |||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||| | || |
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| T |
14281967 |
aaagagatgagagttgtggtggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaaga |
14281868 |
T |
|
| Q |
301 |
attggtgattaagaaaggggaccatgctgctgctgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
379 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
14281867 |
gttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtg |
14281789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 33 - 379
Target Start/End: Complemental strand, 25884966 - 25884620
Alignment:
| Q |
33 |
ttcctctgaatgctggcactgttttcacagtaacttcagtgatcaagatacttcaagagcctatgagtacttttccacaggctcttatcaatatttcgca |
132 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||| | ||||||||||||||||||||| |||| |||||||| ||||||||||||| ||||| || |
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| T |
25884966 |
ttcctttgaattctggcactgttttcacgataacttcgattatcaagatacttcaagagcctttgaggacttttcctcaggctcttatcatgatttctca |
25884867 |
T |
|
| Q |
133 |
agcaacaatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgcaaagagaggagaattgcgatggtgatgtagct |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
25884866 |
agcaacaatatctttagggaggttggatgagttcatgacgagtaaggaaatggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagct |
25884767 |
T |
|
| Q |
233 |
gtggagataaaagatggggaattttcttgggatgatatggatgagaatgaggctttgcgagttaaggaattggtgattaagaaaggggaccatgctgctg |
332 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||| |||||||| || ||| || ||||| | || ||||| |||||||||||||| |||||||||| |
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| T |
25884766 |
gtggagataaaagatgggaaattctcatgggatgataacgatgagaacgacgctctgagagttgaagagttggtaattaagaaaggggatcatgctgctg |
25884667 |
T |
|
| Q |
333 |
ctgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
379 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
25884666 |
ttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
25884620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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