View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_18 (Length: 369)
Name: NF17343_high_18
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 9132820 - 9133153
Alignment:
| Q |
18 |
ggtaggatatattcacacacttactttaccatgtgatctttttatttttagaatcataaaaatctttt-aaggtattgatgaatagatgactaagatgat |
116 |
Q |
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| T |
9132820 |
ggtaggatatattcacacacttactttaccatgtgatctttttatttttagaatcataaaaatctttttaaggtattgatgaatagatgactaagatgat |
9132919 |
T |
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| Q |
117 |
cttagctttccctaactatcaattaaatagttgaataaacataacaaatgaacagattagaagtgatgaaagaaaacttcattatgaaatccactttgga |
216 |
Q |
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| T |
9132920 |
cttagctttccctaactatcaattaaatagttgaataaacataacaaatgaacagattagaagtgatgaaagaaaacttcattatgaaatccactttgga |
9133019 |
T |
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| Q |
217 |
ggtctctatataaaaaatcaaaataggatcatatgatatcattcaatatcacccagctaaacattcaagataaaatgggcacaatcatccataaaagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9133020 |
ggtctctatataaaaaatcaaaataggatcatataatagcattcaatatcacccagctaaacattcaagataaaatgggcacaatcatccataaaagaaa |
9133119 |
T |
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| Q |
317 |
atctacggaataaatgcaataccaattcttcctg |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9133120 |
atctacggaataaatgcaataccaattcttcctg |
9133153 |
T |
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