View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17343_high_19 (Length: 352)
Name: NF17343_high_19
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 1374133 - 1374396
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374133 |
ttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
1374232 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1374233 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcatt |
1374332 |
T |
|
| Q |
219 |
gcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374333 |
gcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaac |
1374396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 1358581 - 1358825
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1358581 |
ttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
1358680 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1358681 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcatt |
1358780 |
T |
|
| Q |
219 |
gcacacacacctgaagtttactaaatttgagtgttaaatcactct |
263 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
1358781 |
gcacacacacctgaagtttactaagtttgagtatttaatcactct |
1358825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 1350675 - 1350938
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1350675 |
ttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
1350774 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1350775 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcatt |
1350874 |
T |
|
| Q |
219 |
gcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaac |
282 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||| |||| |
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|
| T |
1350875 |
gcacacacacctgcggtctactaaatttgagtgttaaatcactctcagctgccattggaagaac |
1350938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 1390434 - 1390664
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1390434 |
ttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
1390533 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390534 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcatt |
1390633 |
T |
|
| Q |
219 |
gcacacacacctgaagtttactaaatttgag |
249 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
1390634 |
gcacacacacctgatgtttactaaatttgag |
1390664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 1394680 - 1394903
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1394680 |
ttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
1394779 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
1394780 |
gttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaatgcatcagtttcatt |
1394879 |
T |
|
| Q |
219 |
gcacacacacctgaagtttactaa |
242 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
1394880 |
gcacacacacctgatgtttactaa |
1394903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 1384329 - 1384541
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1384329 |
ttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
1384428 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1384429 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcatt |
1384528 |
T |
|
| Q |
219 |
gcacacacacctg |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1384529 |
gcacacacacctg |
1384541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 7010324 - 7010534
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
7010324 |
ttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattcttctcaagt |
7010423 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||||||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
7010424 |
gttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcatt |
7010523 |
T |
|
| Q |
219 |
gcacacacacc |
229 |
Q |
| |
|
|| |||||||| |
|
|
| T |
7010524 |
gctcacacacc |
7010534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 7007246 - 7007456
Alignment:
| Q |
19 |
ttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagt |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||| |
|
|
| T |
7007246 |
ttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattcttctcaagt |
7007345 |
T |
|
| Q |
119 |
gttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatcagtttcatt |
218 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||||||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
7007346 |
gttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcattagtttcatt |
7007445 |
T |
|
| Q |
219 |
gcacacacacc |
229 |
Q |
| |
|
|| |||||||| |
|
|
| T |
7007446 |
gctcacacacc |
7007456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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