View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_2 (Length: 677)
Name: NF17343_high_2
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 259 - 661
Target Start/End: Complemental strand, 34768053 - 34767650
Alignment:
| Q |
259 |
caaagtttgtggtatgttggaggatgtgtatctagctnnnnnnncacaacgccaatggtcatgcttatggttttgtgtacttttgcaatgtcaaagatgt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34768053 |
caaagtttgtggtatgttggaggatgtgtatctagctaaaaaa-cgcaacgccaatggtcatgcttatggttttgtgtacttttgcaatgtcaaagatgt |
34767955 |
T |
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| Q |
359 |
tggtaaattgtctgaggctttgaataatgtctattttggtaattatcgggtttcagctaaggttgaaaaggtttgatcggttcggcaattcaaaggaggt |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34767954 |
tggtaaattgtctgaggctttgaataatgtctattttggtaattatcgggtttcagccaaggttgaaaaggtttgatcggttcggcaattcaaaggaggt |
34767855 |
T |
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| Q |
459 |
ggttaaggagagggcgtttcgggtggggtagatcgaagagggagagaaggttcttgaggacaatgatgtgtctgagtttggttcaattttgggggaatgc |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34767854 |
ggttaaggagagggcgtttcgggtggggtagatcgaagagggagagaaggttcttgaggacaatgatgtgtctgagtttggttcaattttgggggaatgc |
34767755 |
T |
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| Q |
559 |
aaaagatgtttcaatg--nnnnnnnnnnaattctaatgtgaagttcagtcgaaaataagcgaatgaagtcgctcatacttttgctaaaaatgtcatattc |
656 |
Q |
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| T |
34767754 |
aaaagatgtttcaatgttttttttttttaattctaaggtgaagttcagtcgaagataagcgaatgaagtcgctcatacttttgctaaaaatatcatattc |
34767655 |
T |
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| Q |
657 |
ttagt |
661 |
Q |
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| T |
34767654 |
ttagt |
34767650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 34768255 - 34768051
Alignment:
| Q |
12 |
agcatagggttatggcgcaatgtagttttcaatcgatacgatcacggttcagcagggaacaacgtgccactttttctagtcttgtgcgatcaagaattgg |
111 |
Q |
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| T |
34768255 |
agcatagggttatggcgcaatgtagttttcaatcggtacgatcacggttcagcagggaacaacgtgccactttttctagtcttgtgcgatcaagaattgg |
34768156 |
T |
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| Q |
112 |
tttaggtcacaacttttctagttcatggtctccaattcgacagggagagtaggaaaatcatgtgggttctgaatttaagaaatttgtttctttttacttt |
211 |
Q |
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| T |
34768155 |
ttcaggtcacggcttttctagttcatggtctccaattcgacagggagagtaggaaaatcatgtgggttctgaatttaagaaatttgtttctttttacttt |
34768056 |
T |
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| Q |
212 |
accaa |
216 |
Q |
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| T |
34768055 |
accaa |
34768051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 566
Target Start/End: Complemental strand, 14150455 - 14150408
Alignment:
| Q |
519 |
caatgatgtgtctgagtttggttcaattttgggggaatgcaaaagatg |
566 |
Q |
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| T |
14150455 |
caatgatgtgtctgagtttggttcaattttggaggaatgcaaaagatg |
14150408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 519 - 567
Target Start/End: Complemental strand, 5477468 - 5477420
Alignment:
| Q |
519 |
caatgatgtgtctgagtttggttcaattttgggggaatgcaaaagatgt |
567 |
Q |
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| T |
5477468 |
caatgatgtgtctgagtttggttcaattttggagggatgcaaaagatgt |
5477420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 27804832 - 27804786
Alignment:
| Q |
520 |
aatgatgtgtctgagtttggttcaattttgggggaatgcaaaagatg |
566 |
Q |
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| T |
27804832 |
aatgatgtgtccgagtttggttcaattttggaggaatgcaaaagatg |
27804786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 642
Target Start/End: Complemental strand, 27804763 - 27804709
Alignment:
| Q |
588 |
tctaatgtgaagttcagtcgaaaataagcgaatgaagtcgctcatacttttgcta |
642 |
Q |
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||||| ||| |||||||||| ||| |||||||||| |||||||||||| |||||| |
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| T |
27804763 |
tctaaggtggagttcagtcggaaacaagcgaatgaggtcgctcatactcttgcta |
27804709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 567
Target Start/End: Original strand, 3214994 - 3215042
Alignment:
| Q |
519 |
caatgatgtgtctgagtttggttcaattttgggggaatgcaaaagatgt |
567 |
Q |
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|||||||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
3214994 |
caatgatgagtccgagtttggttcaattttggaggaatgcaaaagatgt |
3215042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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