View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_22 (Length: 328)
Name: NF17343_high_22
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 41572727 - 41572907
Alignment:
| Q |
1 |
tcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccatagccacctcaacacgtcattccaaacctccata |
100 |
Q |
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| T |
41572727 |
tcttgttactccctgctgccacattccattcctcccacagcagaaacatgttaaccggaagctccatagccacctcaacacgccattccaaacctccata |
41572826 |
T |
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| Q |
101 |
gcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcaccgaatcgtccgga |
181 |
Q |
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| T |
41572827 |
gcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcaccgaatcgtccgga |
41572907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 41572939 - 41573080
Alignment:
| Q |
173 |
tcgtccggatcctgtcatgaaacaacttccaagaaaaggcaaccgagaccgtggtttccgctagcatcaacacctccaacttcttatacatagatttcac |
272 |
Q |
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| T |
41572939 |
tcgtcgggatcctgtcatgaaacaacttccaagaaaaggcaaccgagaccgtggtttccgctagcatcaacacctccaacttcttatacatagatttcac |
41573038 |
T |
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| Q |
273 |
catgaaaacccctttaccctccattctccaccaacaaatatc |
314 |
Q |
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| T |
41573039 |
catgaaaacccctttaccctccattctccaccaacaaatatc |
41573080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27753775 - 27753590
Alignment:
| Q |
1 |
tcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccatagcca---------cctcaacacgtcattccaa |
91 |
Q |
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| T |
27753775 |
tcttattactccctgctgccacattccaatcctcccacagcagaaacaaattgatcggaagctccaaggtcatctctaacacctcagcaccccattccac |
27753676 |
T |
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| Q |
92 |
acctccatagcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcaccgaatcgtcc |
178 |
Q |
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| T |
27753675 |
ccctccttagcaaaggagcattgaatgaa-aagtgacttgccgactccggattcccctcacacagaacacaattcaccgaatcgtcc |
27753590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 27753459 - 27753362
Alignment:
| Q |
212 |
caaccgagaccgtggtttccgctagcatcaacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccaccaacaaat |
311 |
Q |
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| T |
27753459 |
caaccgagaccgtggtttccgctagcaacaac---tccaacttcttatacatagatttcactgagaacaccccgttaccctccaatctccaccaccaaat |
27753363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 27753547 - 27753512
Alignment:
| Q |
181 |
atcctgtcatgaaacaacttccaagaaaaggcaacc |
216 |
Q |
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| T |
27753547 |
atcctgtcatgaaacaacttccaagaaaagacaacc |
27753512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 26728711 - 26728609
Alignment:
| Q |
70 |
ccacctcaacacgtcattccaaacctccatagcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcacc |
169 |
Q |
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| T |
26728711 |
ccacctccacacgcctttccacacctccatagcaaacttacaatgaatgaacaaatgattcacggactctgcattcccctcacacaaaacacagctcacc |
26728612 |
T |
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| Q |
170 |
gaa |
172 |
Q |
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||| |
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| T |
26728611 |
gaa |
26728609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 26728449 - 26728411
Alignment:
| Q |
235 |
agcatcaacacctccaacttcttatacatagatttcacc |
273 |
Q |
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| T |
26728449 |
agcatcaacacctccaacttcttgtacatagatttcacc |
26728411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 21942577 - 21942654
Alignment:
| Q |
227 |
tttccgctagcatcaacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccacc |
304 |
Q |
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| T |
21942577 |
tttcctctaacatcaacacctccaacttcttatacattgatttaaccgtaaaaacccctttttcctccaatctccacc |
21942654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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