View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_25 (Length: 300)
Name: NF17343_high_25
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 4065094 - 4065269
Alignment:
| Q |
11 |
cagagattcaaataacctggaatttagacagcattggcgacttggttatagagtcatcagaaaattgcaaaccagcatggaagtcaggaaagcttattat |
110 |
Q |
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| T |
4065094 |
cagagattcaaataacctggaatttagacagcattggcgacttggttatagagtcatcagaaaattgcaaaccagcatggaagtcaggaaagcttattat |
4065193 |
T |
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| Q |
111 |
tgctgatgggatatcaagtccttgattagcatctggagggtattcatcaatgtgcaagaagccctatgcagaccaa |
186 |
Q |
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| T |
4065194 |
tgctgatgggatatcaagtccttgagtagcatctggagggtattcatcaatgtgcaagaagccctatgcagaccaa |
4065269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 4058755 - 4058915
Alignment:
| Q |
18 |
tcaaataacctggaatttagacagcattggcgacttggttatagagtcatcagaaaattgcaaaccagcatggaagtcaggaaagcttattattgctgat |
117 |
Q |
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| T |
4058755 |
tcaaataacctgtaatttagataacattggcgacttgcttatagagtcattagaaaattgcaaaccagcatggaagtcaggaaagcttattattgctgat |
4058854 |
T |
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| Q |
118 |
gggatatcaagtccttgattagcatctggagggtattcatcaatgtgcaagaagccctatg |
178 |
Q |
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| T |
4058855 |
gggatgtcaaatccctggttggcatctggaggatattcatcaatgtgcaagaagccctatg |
4058915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 4065334 - 4065367
Alignment:
| Q |
251 |
ttgaacacaccttatcaaactcgatatttaatac |
284 |
Q |
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| T |
4065334 |
ttgaacacaccttatcaaactcgatatttaatac |
4065367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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