View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_28 (Length: 293)
Name: NF17343_high_28
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_28 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 46344999 - 46344725
Alignment:
| Q |
19 |
aatcagcctatactcgtgcaccaaaggtgagcgtagtagcaaaaataaatcatctttgttttctctgtattgtgtgcaagattagttatgcaaagtgcta |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46344999 |
aatcagcctatactcgtgcaccaaaggtgagcatagtagcaaaaataaatcatctttgttttctctgaattgtgtgcaagattagttatgcaaagtgcta |
46344900 |
T |
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| Q |
119 |
attttgtttaaaatttattaggcccttttattaattttaataatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344899 |
attttgtttaaaatttattaggcccttttattaattttaataatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccag |
46344800 |
T |
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| Q |
219 |
cacctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaatggac |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46344799 |
cacctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggac |
46344725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 46462525 - 46462799
Alignment:
| Q |
19 |
aatcagcctatactcgtgcaccaaaggtgagcgtagtagcaaaaataaatcatctttgttttctctgtattgtgtgcaagattagttatgcaaagtgcta |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46462525 |
aatcagcctatactcgtgcaccaaaggtgagcatagtagcaaaaataaatcatctttgttttctctgaattgtgtgcaagattagttatgcaaagtgcta |
46462624 |
T |
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| Q |
119 |
attttgtttaaaatttattaggcccttttattaattttaataatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccag |
218 |
Q |
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| T |
46462625 |
attttgtttaaaatttattaggcccttttattaattttaataatgaaaatatggcagatgagcacaaaattttcggatttgatggcttttggtgggccag |
46462724 |
T |
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| Q |
219 |
cacctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaatggac |
293 |
Q |
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| T |
46462725 |
cacctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggac |
46462799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 293
Target Start/End: Original strand, 46451562 - 46451831
Alignment:
| Q |
27 |
tatactcgtgcaccaaaggtgagcgtagtagcaaaaataaatcatctttgttttctctgtattgtgtg---caagattagttatgcaaagtgctaatttt |
123 |
Q |
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||||||||| |||||||||||||| |||||| ||| | |||| |||||| |||| ||| ||| |||| ||||||| || |||||| | |||| ||| |
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| T |
46451562 |
tatactcgttcaccaaaggtgagcatagtagtaaata-aaattatctttattttttcttaattatgtgaaagaagattaattttgcaaattactaaattt |
46451660 |
T |
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| Q |
124 |
gtttaaaatttattaggccctttt-attaattttaataatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacc |
222 |
Q |
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| T |
46451661 |
ggtcaaaatttatgagacccttttaataaataatgatgatgataatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacc |
46451760 |
T |
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| Q |
223 |
tgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaatggac |
293 |
Q |
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| T |
46451761 |
tgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggac |
46451831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 46466097 - 46466216
Alignment:
| Q |
169 |
atggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacctgaaagaatcaatggaaggttggctatgattggttttgtagcagca |
268 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
46466097 |
atggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgca |
46466196 |
T |
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| Q |
269 |
atgggggtggaaatagcaaa |
288 |
Q |
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| T |
46466197 |
atgggggtggaattagcaaa |
46466216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 46471302 - 46471421
Alignment:
| Q |
169 |
atggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacctgaaagaatcaatggaaggttggctatgattggttttgtagcagca |
268 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
46471302 |
atggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgca |
46471401 |
T |
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| Q |
269 |
atgggggtggaaatagcaaa |
288 |
Q |
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| T |
46471402 |
atgggggtggaattagcaaa |
46471421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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