View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17343_high_29 (Length: 289)
Name: NF17343_high_29
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 7887926 - 7887638
Alignment:
| Q |
8 |
gaacacagacaaatgaaaaaactacgaattggtgatatcgataataagaatacatgaattggaaacgaagaaataggata--aattcacctttgaaaaaa |
105 |
Q |
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| T |
7887926 |
gaacacaaacaaatgaaaaaactacgaattggtgatatcgataataagaatacatgaattggaaacgaagaaataggatataaattcagctttgaaaaaa |
7887827 |
T |
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| Q |
106 |
tcctatcaacctaagatannnnnnngtacagttaataaagaaagaaatgatgcaa-----cattacattgcgcattgccgtttcctgaatcagagggaga |
200 |
Q |
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| T |
7887826 |
tcctatcaacctaagatttttttttgtacagttaataaagaaagaaatgatgcaatgcaacattacattgcgcattgccgtttcctgaatcagtgggaga |
7887727 |
T |
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| Q |
201 |
cactgactcatctatcttataaaaggcagtgttccattctttccaaatattccatttttaacaatttcaagtattcgaacatgaacatg |
289 |
Q |
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| T |
7887726 |
cactgactcatctatcttataaaaggcagtgttccattctttccaaatattccatttttaacaatttcaagtattcgaacatgaacatg |
7887638 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 16352749 - 16352788
Alignment:
| Q |
23 |
aaaaaactacgaattggtgatatcgataataagaatacat |
62 |
Q |
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| T |
16352749 |
aaaaaactacgaatcggtgatatcgatgataagaatacat |
16352788 |
T |
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