View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17343_high_32 (Length: 259)
Name: NF17343_high_32
Description: NF17343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17343_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 4065011 - 4064764
Alignment:
| Q |
1 |
ctgttctctcatacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4065011 |
ctgttctctcatacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtatt |
4064912 |
T |
|
| Q |
101 |
gtattttgtattcttgctaaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgttagtcccaata |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064911 |
gtattttgtattcttgataaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgttagtcccaata |
4064812 |
T |
|
| Q |
201 |
tcttggggtacaagtaattatattgtgtataccaataagcgaccctat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064811 |
tcttggggtacaagtaattatattgtgtataccaataagcgaccctat |
4064764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 4058661 - 4058477
Alignment:
| Q |
5 |
tctctcatacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtat |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||| ||| ||||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
4058661 |
tctctcatacacagaagttttgctcgtacccctaacaactcctgatttcagcatgccttacaacgtcatcacaattacttgcacagtttttgcattgtat |
4058562 |
T |
|
| Q |
105 |
tttgtattcttgctaaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgt |
189 |
Q |
| |
|
|||| || ||||||||| ||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058561 |
tttggatccttgctaaatgtactccgaagacgagttggagaggaggaaagacttttgaaaaacaaaggtaactcttgactcttgt |
4058477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University